miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31806 5' -56.1 NC_006938.1 + 21821 0.66 0.67536
Target:  5'- gUUCGUCCUGuGCGAGCUGGUucgcuGcGAg -3'
miRNA:   3'- -AGGCGGGACuUGUUCGACCGu----CaCUa -5'
31806 5' -56.1 NC_006938.1 + 50206 0.66 0.67536
Target:  5'- cUCCGCCCaGGcACcGGCUGGCuuuGUcGAc -3'
miRNA:   3'- -AGGCGGGaCU-UGuUCGACCGu--CA-CUa -5'
31806 5' -56.1 NC_006938.1 + 48333 0.66 0.664357
Target:  5'- -aCGgCCUGAACcccGGCUcgggcGGCGGUGAc -3'
miRNA:   3'- agGCgGGACUUGu--UCGA-----CCGUCACUa -5'
31806 5' -56.1 NC_006938.1 + 33057 0.66 0.653324
Target:  5'- gUCCGUggcgaCCUGuACAGGgUGGCcgAGUGGUa -3'
miRNA:   3'- -AGGCG-----GGACuUGUUCgACCG--UCACUA- -5'
31806 5' -56.1 NC_006938.1 + 4715 0.66 0.631208
Target:  5'- gUCCcUCCgGAAgAAGCUGGCAGUc-- -3'
miRNA:   3'- -AGGcGGGaCUUgUUCGACCGUCAcua -5'
31806 5' -56.1 NC_006938.1 + 37986 0.66 0.631208
Target:  5'- gCCGCCCUGAgacGCGGGCcacCAGUGu- -3'
miRNA:   3'- aGGCGGGACU---UGUUCGaccGUCACua -5'
31806 5' -56.1 NC_006938.1 + 34642 0.67 0.620146
Target:  5'- cUCCGaCCCUGGccugcucguccuGCAGGUUGGCGccGAUc -3'
miRNA:   3'- -AGGC-GGGACU------------UGUUCGACCGUcaCUA- -5'
31806 5' -56.1 NC_006938.1 + 52482 0.67 0.609095
Target:  5'- cCCGCUCcagacacaGAACcAGCUGGCAGcGAa -3'
miRNA:   3'- aGGCGGGa-------CUUGuUCGACCGUCaCUa -5'
31806 5' -56.1 NC_006938.1 + 12070 0.67 0.598064
Target:  5'- -aCGCCCUGGAuCAgcucccacacgcGGCugaUGGCGGUGGc -3'
miRNA:   3'- agGCGGGACUU-GU------------UCG---ACCGUCACUa -5'
31806 5' -56.1 NC_006938.1 + 62776 0.67 0.576099
Target:  5'- gCCGCCCUGc-CGAG-UGGCAGcGAc -3'
miRNA:   3'- aGGCGGGACuuGUUCgACCGUCaCUa -5'
31806 5' -56.1 NC_006938.1 + 41869 0.67 0.575005
Target:  5'- gCUGUCCUGGGCAuuguagggaGGCUGcugcgacGCGGUGAUu -3'
miRNA:   3'- aGGCGGGACUUGU---------UCGAC-------CGUCACUA- -5'
31806 5' -56.1 NC_006938.1 + 56678 0.67 0.565181
Target:  5'- gCCGCgUUGGACGAGCagucagcuUGGCGagcGUGAUg -3'
miRNA:   3'- aGGCGgGACUUGUUCG--------ACCGU---CACUA- -5'
31806 5' -56.1 NC_006938.1 + 4422 0.68 0.543519
Target:  5'- gCUGCCCUGGGCAAGUUuGCcGUGc- -3'
miRNA:   3'- aGGCGGGACUUGUUCGAcCGuCACua -5'
31806 5' -56.1 NC_006938.1 + 51923 0.68 0.522136
Target:  5'- -aCGCUCUGGgguCAGGC-GGCGGUGGg -3'
miRNA:   3'- agGCGGGACUu--GUUCGaCCGUCACUa -5'
31806 5' -56.1 NC_006938.1 + 15801 0.69 0.449236
Target:  5'- cUCCGCUCaugGAGCAgccagagAGCUGGCAGa--- -3'
miRNA:   3'- -AGGCGGGa--CUUGU-------UCGACCGUCacua -5'
31806 5' -56.1 NC_006938.1 + 52522 0.71 0.349322
Target:  5'- cUCGCCCUGAACAcAGCUGaCAG-GAg -3'
miRNA:   3'- aGGCGGGACUUGU-UCGACcGUCaCUa -5'
31806 5' -56.1 NC_006938.1 + 2777 0.81 0.07666
Target:  5'- -gCGCCCggcgGGACAGGUUGGCGGUGGUu -3'
miRNA:   3'- agGCGGGa---CUUGUUCGACCGUCACUA- -5'
31806 5' -56.1 NC_006938.1 + 12059 1.06 0.001334
Target:  5'- gUCCGCCCUGAACAAGCUGGCAGUGAUc -3'
miRNA:   3'- -AGGCGGGACUUGUUCGACCGUCACUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.