miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31807 3' -55.6 NC_006938.1 + 15621 0.66 0.759685
Target:  5'- -aGCUG---GCCACGGUCGUUgaUCCGg -3'
miRNA:   3'- caCGACuagCGGUGCUAGCGGa-AGGC- -5'
31807 3' -55.6 NC_006938.1 + 58137 0.66 0.759685
Target:  5'- -cGUUGAUCGUCACGccccaGUCUgugCCGg -3'
miRNA:   3'- caCGACUAGCGGUGCuag--CGGAa--GGC- -5'
31807 3' -55.6 NC_006938.1 + 36943 0.66 0.759685
Target:  5'- -gGCUGAugaugucagacaUCGCCgugGCGAUUGCCUgcagcuUCUGc -3'
miRNA:   3'- caCGACU------------AGCGG---UGCUAGCGGA------AGGC- -5'
31807 3' -55.6 NC_006938.1 + 24870 0.66 0.749487
Target:  5'- -aGCUGcgccAUgGCgGCGAUCGCCgcgCCc -3'
miRNA:   3'- caCGAC----UAgCGgUGCUAGCGGaa-GGc -5'
31807 3' -55.6 NC_006938.1 + 51141 0.66 0.728751
Target:  5'- -cGCgGAUUgccauuccgGCCGCGAUCGUCgcgUUCCGc -3'
miRNA:   3'- caCGaCUAG---------CGGUGCUAGCGG---AAGGC- -5'
31807 3' -55.6 NC_006938.1 + 48384 0.67 0.686236
Target:  5'- uUGUUGGUCGCgAUGAgCGUCcagUCCGu -3'
miRNA:   3'- cACGACUAGCGgUGCUaGCGGa--AGGC- -5'
31807 3' -55.6 NC_006938.1 + 25895 0.67 0.68516
Target:  5'- cGUGCUGGcagccguUgGCCACGAUCGUUcgggCCu -3'
miRNA:   3'- -CACGACU-------AgCGGUGCUAGCGGaa--GGc -5'
31807 3' -55.6 NC_006938.1 + 34112 0.67 0.675453
Target:  5'- -cGCUGGUCGCuCugGcucggUGCCUUCgGc -3'
miRNA:   3'- caCGACUAGCG-GugCua---GCGGAAGgC- -5'
31807 3' -55.6 NC_006938.1 + 45085 0.67 0.673291
Target:  5'- cGUGCUGAUCGUgACaGUUGUCguggcgucguugUCCGa -3'
miRNA:   3'- -CACGACUAGCGgUGcUAGCGGa-----------AGGC- -5'
31807 3' -55.6 NC_006938.1 + 51336 0.68 0.621143
Target:  5'- -aGCUGGUCGCUgaagGCGAUgagCGCCgagauggCCGu -3'
miRNA:   3'- caCGACUAGCGG----UGCUA---GCGGaa-----GGC- -5'
31807 3' -55.6 NC_006938.1 + 6485 0.68 0.610271
Target:  5'- uGUGCUuccGUCGUUcagACuGAUCGCCUUCUGg -3'
miRNA:   3'- -CACGAc--UAGCGG---UG-CUAGCGGAAGGC- -5'
31807 3' -55.6 NC_006938.1 + 15266 0.68 0.599418
Target:  5'- aUGCUGGccggUCGaCACGAccUCGCCUUCg- -3'
miRNA:   3'- cACGACU----AGCgGUGCU--AGCGGAAGgc -5'
31807 3' -55.6 NC_006938.1 + 58730 0.7 0.493666
Target:  5'- -cGCUGAuuUCGgCACca-CGCCUUCCGa -3'
miRNA:   3'- caCGACU--AGCgGUGcuaGCGGAAGGC- -5'
31807 3' -55.6 NC_006938.1 + 43324 0.76 0.220349
Target:  5'- cGUGCUGuUCGCCGCGAagGCaCUggCCGg -3'
miRNA:   3'- -CACGACuAGCGGUGCUagCG-GAa-GGC- -5'
31807 3' -55.6 NC_006938.1 + 12459 1.08 0.001285
Target:  5'- cGUGCUGAUCGCCACGAUCGCCUUCCGc -3'
miRNA:   3'- -CACGACUAGCGGUGCUAGCGGAAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.