miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31808 5' -51 NC_006938.1 + 1463 0.69 0.80761
Target:  5'- -gGAgAAGGAgcUGCCUccCGAGGGCGAGg -3'
miRNA:   3'- agCUgUUCCU--GUGGAa-GUUCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 1672 0.69 0.79784
Target:  5'- aCGACAAGGACaagGCCUggugggacCGGGAGCu-- -3'
miRNA:   3'- aGCUGUUCCUG---UGGAa-------GUUCUCGcuc -5'
31808 5' -51 NC_006938.1 + 2327 0.68 0.878029
Target:  5'- cUCGGCGgggAGGACuCCgUCGAGGaCGAGg -3'
miRNA:   3'- -AGCUGU---UCCUGuGGaAGUUCUcGCUC- -5'
31808 5' -51 NC_006938.1 + 3504 0.67 0.912479
Target:  5'- cUCGACccagucccgguGGACACCgUUggGcGCGAGg -3'
miRNA:   3'- -AGCUGuu---------CCUGUGGaAGuuCuCGCUC- -5'
31808 5' -51 NC_006938.1 + 6707 0.67 0.893156
Target:  5'- -gGAUggGGACACCgcgaAAGAGUGc- -3'
miRNA:   3'- agCUGuuCCUGUGGaag-UUCUCGCuc -5'
31808 5' -51 NC_006938.1 + 10674 0.66 0.937273
Target:  5'- aCGGCAAGGugG---UCGAGGGCGc- -3'
miRNA:   3'- aGCUGUUCCugUggaAGUUCUCGCuc -5'
31808 5' -51 NC_006938.1 + 10823 0.66 0.941927
Target:  5'- aUCGGCAA-GACGCgcgaguuCUUCGAGAagugcuacgGCGAGg -3'
miRNA:   3'- -AGCUGUUcCUGUG-------GAAGUUCU---------CGCUC- -5'
31808 5' -51 NC_006938.1 + 12105 0.66 0.92008
Target:  5'- gCGACuugguGGGGAUGuCCUUCG-GAGCGAc -3'
miRNA:   3'- aGCUG-----UUCCUGU-GGAAGUuCUCGCUc -5'
31808 5' -51 NC_006938.1 + 12919 1.11 0.002552
Target:  5'- cUCGACAAGGACACCUUCAAGAGCGAGg -3'
miRNA:   3'- -AGCUGUUCCUGUGGAAGUUCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 13060 0.68 0.861013
Target:  5'- gCGAguGGGACaaguacgACCgcgUCAagcAGGGCGAGg -3'
miRNA:   3'- aGCUguUCCUG-------UGGa--AGU---UCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 15929 0.68 0.878029
Target:  5'- gCGcACAAGGcAUACUcacagggCAGGGGCGAGg -3'
miRNA:   3'- aGC-UGUUCC-UGUGGaa-----GUUCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 18051 0.66 0.94243
Target:  5'- gUCGACGAGGACcgGCUcauggaggUCGAgauccGAGCGAc -3'
miRNA:   3'- -AGCUGUUCCUG--UGGa-------AGUU-----CUCGCUc -5'
31808 5' -51 NC_006938.1 + 18400 0.74 0.547247
Target:  5'- aCGGCAAGGGCACCaa-GGGAGCc-- -3'
miRNA:   3'- aGCUGUUCCUGUGGaagUUCUCGcuc -5'
31808 5' -51 NC_006938.1 + 22201 0.66 0.94243
Target:  5'- aUCGuACAAGGACGggauagUCUUCAGccccuccGGCGAGg -3'
miRNA:   3'- -AGC-UGUUCCUGU------GGAAGUUc------UCGCUC- -5'
31808 5' -51 NC_006938.1 + 23054 0.67 0.907183
Target:  5'- aCGuCAAGGACAUg--CAggaccAGAGCGAGc -3'
miRNA:   3'- aGCuGUUCCUGUGgaaGU-----UCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 23224 0.69 0.83573
Target:  5'- uUCGACGAcgucaugggcGGAC-CCUUCGAGuggucGGCGAc -3'
miRNA:   3'- -AGCUGUU----------CCUGuGGAAGUUC-----UCGCUc -5'
31808 5' -51 NC_006938.1 + 23869 0.67 0.883446
Target:  5'- gCGACGAGGcACagugcaacaucacuGgCUUCAAGGGCGuGa -3'
miRNA:   3'- aGCUGUUCC-UG--------------UgGAAGUUCUCGCuC- -5'
31808 5' -51 NC_006938.1 + 24494 0.71 0.692182
Target:  5'- -gGAgGAGGACgacGCCUUCAAG-GCGGa -3'
miRNA:   3'- agCUgUUCCUG---UGGAAGUUCuCGCUc -5'
31808 5' -51 NC_006938.1 + 27682 0.67 0.913774
Target:  5'- cUCGGCGacuacauacAGGuCGCCUUCAccuggaaggucGGuGGCGAGa -3'
miRNA:   3'- -AGCUGU---------UCCuGUGGAAGU-----------UC-UCGCUC- -5'
31808 5' -51 NC_006938.1 + 28233 0.69 0.83573
Target:  5'- -gGAUggGGcACACCUaCGAGGGCuccGAGg -3'
miRNA:   3'- agCUGuuCC-UGUGGAaGUUCUCG---CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.