miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31808 5' -51 NC_006938.1 + 15929 0.68 0.878029
Target:  5'- gCGcACAAGGcAUACUcacagggCAGGGGCGAGg -3'
miRNA:   3'- aGC-UGUUCC-UGUGGaa-----GUUCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 30721 0.68 0.870068
Target:  5'- -gGAgGAGGcACACCUgcu-GGGCGAGu -3'
miRNA:   3'- agCUgUUCC-UGUGGAaguuCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 13060 0.68 0.861013
Target:  5'- gCGAguGGGACaaguacgACCgcgUCAagcAGGGCGAGg -3'
miRNA:   3'- aGCUguUCCUG-------UGGa--AGU---UCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 55660 0.69 0.83573
Target:  5'- gCGGCAAGGGCGgCCU--GGGAG-GAGg -3'
miRNA:   3'- aGCUGUUCCUGU-GGAagUUCUCgCUC- -5'
31808 5' -51 NC_006938.1 + 28233 0.69 0.83573
Target:  5'- -gGAUggGGcACACCUaCGAGGGCuccGAGg -3'
miRNA:   3'- agCUGuuCC-UGUGGAaGUUCUCG---CUC- -5'
31808 5' -51 NC_006938.1 + 23224 0.69 0.83573
Target:  5'- uUCGACGAcgucaugggcGGAC-CCUUCGAGuggucGGCGAc -3'
miRNA:   3'- -AGCUGUU----------CCUGuGGAAGUUC-----UCGCUc -5'
31808 5' -51 NC_006938.1 + 1463 0.69 0.80761
Target:  5'- -gGAgAAGGAgcUGCCUccCGAGGGCGAGg -3'
miRNA:   3'- agCUgUUCCU--GUGGAa-GUUCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 59592 0.69 0.79784
Target:  5'- gCGACGcGGcaaGCACCUUCAAcGGCGGu -3'
miRNA:   3'- aGCUGUuCC---UGUGGAAGUUcUCGCUc -5'
31808 5' -51 NC_006938.1 + 1672 0.69 0.79784
Target:  5'- aCGACAAGGACaagGCCUggugggacCGGGAGCu-- -3'
miRNA:   3'- aGCUGUUCCUG---UGGAa-------GUUCUCGcuc -5'
31808 5' -51 NC_006938.1 + 59318 0.7 0.757072
Target:  5'- gUCGGCGAGGACGCgaUgGAGuucGCGGa -3'
miRNA:   3'- -AGCUGUUCCUGUGgaAgUUCu--CGCUc -5'
31808 5' -51 NC_006938.1 + 55525 0.71 0.703218
Target:  5'- cCGAUGAGGAaGCCgaUCuGGGGCGAGa -3'
miRNA:   3'- aGCUGUUCCUgUGGa-AGuUCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 53290 0.71 0.692182
Target:  5'- aCGACGuGGACAUCacgUUCGAGAGCa-- -3'
miRNA:   3'- aGCUGUuCCUGUGG---AAGUUCUCGcuc -5'
31808 5' -51 NC_006938.1 + 24494 0.71 0.692182
Target:  5'- -gGAgGAGGACgacGCCUUCAAG-GCGGa -3'
miRNA:   3'- agCUgUUCCUG---UGGAAGUUCuCGCUc -5'
31808 5' -51 NC_006938.1 + 33397 0.71 0.689968
Target:  5'- aCGACAAGGGCACCaUCcuuggcacaccGAGgGAGa -3'
miRNA:   3'- aGCUGUUCCUGUGGaAGuu---------CUCgCUC- -5'
31808 5' -51 NC_006938.1 + 50115 0.71 0.681086
Target:  5'- cCGcCGAGGgugucauucGCACCUUCGauggagAGGGCGAGa -3'
miRNA:   3'- aGCuGUUCC---------UGUGGAAGU------UCUCGCUC- -5'
31808 5' -51 NC_006938.1 + 61130 0.72 0.658761
Target:  5'- gCGGCGAGGACuucACCUggGAGGGCuGGGc -3'
miRNA:   3'- aGCUGUUCCUG---UGGAagUUCUCG-CUC- -5'
31808 5' -51 NC_006938.1 + 40526 0.72 0.625107
Target:  5'- aCGACGAGGACGUCggCGAGAuCGAGu -3'
miRNA:   3'- aGCUGUUCCUGUGGaaGUUCUcGCUC- -5'
31808 5' -51 NC_006938.1 + 29429 0.73 0.591509
Target:  5'- cCGACGAGGACAUUcgcCAAGGGCGu- -3'
miRNA:   3'- aGCUGUUCCUGUGGaa-GUUCUCGCuc -5'
31808 5' -51 NC_006938.1 + 54837 0.74 0.558228
Target:  5'- aUCGACAgaAGGACACCUgCGuGAGCa-- -3'
miRNA:   3'- -AGCUGU--UCCUGUGGAaGUuCUCGcuc -5'
31808 5' -51 NC_006938.1 + 18400 0.74 0.547247
Target:  5'- aCGGCAAGGGCACCaa-GGGAGCc-- -3'
miRNA:   3'- aGCUGUUCCUGUGGaagUUCUCGcuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.