miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31809 3' -56.6 NC_006938.1 + 1406 0.66 0.710144
Target:  5'- cGCgGGGAUCGGaGaCAcGCCGGUCGc -3'
miRNA:   3'- aUGgCUCUGGCC-CaGUaUGGCCAGUc -5'
31809 3' -56.6 NC_006938.1 + 6113 0.66 0.699587
Target:  5'- gGCCGAGGCaUGGGgcgacUAUGCCGGagccaCGGg -3'
miRNA:   3'- aUGGCUCUG-GCCCa----GUAUGGCCa----GUC- -5'
31809 3' -56.6 NC_006938.1 + 55596 0.66 0.688967
Target:  5'- cGCCGAGGcguggccccuCCGuGGUCGUcucuugGCCGGguggCGGg -3'
miRNA:   3'- aUGGCUCU----------GGC-CCAGUA------UGGCCa---GUC- -5'
31809 3' -56.6 NC_006938.1 + 3424 0.66 0.688967
Target:  5'- cACCGGGACUGGGUCGaGgaGGgcuUCAa -3'
miRNA:   3'- aUGGCUCUGGCCCAGUaUggCC---AGUc -5'
31809 3' -56.6 NC_006938.1 + 63107 0.66 0.667581
Target:  5'- gUGCCGAGGCCGaGUaugGCCauGGUCAc -3'
miRNA:   3'- -AUGGCUCUGGCcCAguaUGG--CCAGUc -5'
31809 3' -56.6 NC_006938.1 + 21859 0.67 0.635288
Target:  5'- aUACCG-GuCCGGGUUGU-CCGGgucCAGg -3'
miRNA:   3'- -AUGGCuCuGGCCCAGUAuGGCCa--GUC- -5'
31809 3' -56.6 NC_006938.1 + 33272 0.67 0.613729
Target:  5'- aGCCG-GuCCGGGcugcacCGUGCgGGUCGGg -3'
miRNA:   3'- aUGGCuCuGGCCCa-----GUAUGgCCAGUC- -5'
31809 3' -56.6 NC_006938.1 + 43423 0.68 0.549685
Target:  5'- gGCCuccccguggGAGGCgGGGaCAUACgCGGUCGGc -3'
miRNA:   3'- aUGG---------CUCUGgCCCaGUAUG-GCCAGUC- -5'
31809 3' -56.6 NC_006938.1 + 7285 0.69 0.50813
Target:  5'- gGCCuGAuGACUGGGUaCAgacaGCUGGUCGGa -3'
miRNA:   3'- aUGG-CU-CUGGCCCA-GUa---UGGCCAGUC- -5'
31809 3' -56.6 NC_006938.1 + 24911 0.69 0.487851
Target:  5'- gACCGuGGCCgGGGUgAUGCUGGaacUCGGu -3'
miRNA:   3'- aUGGCuCUGG-CCCAgUAUGGCC---AGUC- -5'
31809 3' -56.6 NC_006938.1 + 24718 0.71 0.375442
Target:  5'- aUGCCGuGGCCgGGGUCGUagcGCCGGaggUAGa -3'
miRNA:   3'- -AUGGCuCUGG-CCCAGUA---UGGCCa--GUC- -5'
31809 3' -56.6 NC_006938.1 + 5214 0.72 0.33405
Target:  5'- cGaaGAGACaGGGUCcuggGCCGGUCAGa -3'
miRNA:   3'- aUggCUCUGgCCCAGua--UGGCCAGUC- -5'
31809 3' -56.6 NC_006938.1 + 60958 0.72 0.326183
Target:  5'- cGCCGaAGAgCGGGUC--ACCGGUCuGa -3'
miRNA:   3'- aUGGC-UCUgGCCCAGuaUGGCCAGuC- -5'
31809 3' -56.6 NC_006938.1 + 37125 0.75 0.230419
Target:  5'- gACaGGGGCCGGGUCAUgucccgcgcGCCGGUCc- -3'
miRNA:   3'- aUGgCUCUGGCCCAGUA---------UGGCCAGuc -5'
31809 3' -56.6 NC_006938.1 + 13282 1.07 0.00119
Target:  5'- cUACCGAGACCGGGUCAUACCGGUCAGg -3'
miRNA:   3'- -AUGGCUCUGGCCCAGUAUGGCCAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.