miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31809 5' -59 NC_006938.1 + 55614 0.66 0.588788
Target:  5'- aCGCCGAgacGGAG-AGGU-CGCCgagGCGUGGc -3'
miRNA:   3'- -GUGGCU---CCUCgUCUAcGCGG---CGCACC- -5'
31809 5' -59 NC_006938.1 + 52244 0.66 0.567828
Target:  5'- cCACCGAGGAGCuGcUGCaggagcugguugGCUGCcagcUGGg -3'
miRNA:   3'- -GUGGCUCCUCGuCuACG------------CGGCGc---ACC- -5'
31809 5' -59 NC_006938.1 + 37260 0.66 0.557417
Target:  5'- uGCCcauGGGAGCGGcgGCGCUa-GUGGc -3'
miRNA:   3'- gUGGc--UCCUCGUCuaCGCGGcgCACC- -5'
31809 5' -59 NC_006938.1 + 2060 0.66 0.557417
Target:  5'- gACgCGAGGGGCcGGuucuacgacUGCGCCGagcagGUGGu -3'
miRNA:   3'- gUG-GCUCCUCGuCU---------ACGCGGCg----CACC- -5'
31809 5' -59 NC_006938.1 + 10198 0.66 0.554304
Target:  5'- gGCCGAGGAGCAcGUGgacguucucacaguCGCCcagggcuuCGUGGa -3'
miRNA:   3'- gUGGCUCCUCGUcUAC--------------GCGGc-------GCACC- -5'
31809 5' -59 NC_006938.1 + 30778 0.66 0.547061
Target:  5'- gAUCaAGGAGCAGGccCGaCGCGUGGg -3'
miRNA:   3'- gUGGcUCCUCGUCUacGCgGCGCACC- -5'
31809 5' -59 NC_006938.1 + 34033 0.67 0.530623
Target:  5'- -uCCGGcGGAGCAGcAucuccagugacucguUGCGCaGCGUGGc -3'
miRNA:   3'- guGGCU-CCUCGUC-U---------------ACGCGgCGCACC- -5'
31809 5' -59 NC_006938.1 + 31019 0.67 0.486431
Target:  5'- aGCCGAGaaAGCAuGGuucUG-GCCGCGUGGa -3'
miRNA:   3'- gUGGCUCc-UCGU-CU---ACgCGGCGCACC- -5'
31809 5' -59 NC_006938.1 + 46667 0.67 0.486431
Target:  5'- aGCUGGGGAGC-GcgGgGCCGUGUc- -3'
miRNA:   3'- gUGGCUCCUCGuCuaCgCGGCGCAcc -5'
31809 5' -59 NC_006938.1 + 41590 0.67 0.476628
Target:  5'- uCAgCaGGGAGCGGcUGCGCgGCGgccUGGg -3'
miRNA:   3'- -GUgGcUCCUCGUCuACGCGgCGC---ACC- -5'
31809 5' -59 NC_006938.1 + 42762 0.68 0.420021
Target:  5'- cCACCuGAGGAGguGGUGgaGCCGCc--- -3'
miRNA:   3'- -GUGG-CUCCUCguCUACg-CGGCGcacc -5'
31809 5' -59 NC_006938.1 + 42522 0.69 0.392411
Target:  5'- gGCCGAGGgaguGGCAGgcGUcgcuccgGCCGCGUcGGc -3'
miRNA:   3'- gUGGCUCC----UCGUCuaCG-------CGGCGCA-CC- -5'
31809 5' -59 NC_006938.1 + 16394 0.69 0.376083
Target:  5'- aGCCGGaGAGCGGGUGCuUCGCG-GGc -3'
miRNA:   3'- gUGGCUcCUCGUCUACGcGGCGCaCC- -5'
31809 5' -59 NC_006938.1 + 18592 0.69 0.376083
Target:  5'- cCACCGucguccGGccGGUAGAUGCGCCGCcagaucgGGg -3'
miRNA:   3'- -GUGGCu-----CC--UCGUCUACGCGGCGca-----CC- -5'
31809 5' -59 NC_006938.1 + 29310 0.71 0.297945
Target:  5'- cCACCG-GGA-CGGAgacgacaucaUGCGCCGgGUGGu -3'
miRNA:   3'- -GUGGCuCCUcGUCU----------ACGCGGCgCACC- -5'
31809 5' -59 NC_006938.1 + 51487 0.72 0.244348
Target:  5'- aGCCGGGGcagucgaGGC-GAUcGuCGCCGCGUGGa -3'
miRNA:   3'- gUGGCUCC-------UCGuCUA-C-GCGGCGCACC- -5'
31809 5' -59 NC_006938.1 + 35798 0.75 0.154106
Target:  5'- -uUCGAGGGGCAGAccaUGCGCCa-GUGGg -3'
miRNA:   3'- guGGCUCCUCGUCU---ACGCGGcgCACC- -5'
31809 5' -59 NC_006938.1 + 27017 0.77 0.124479
Target:  5'- aCGgCGAGGAGUGGGaGCGCCGCGUc- -3'
miRNA:   3'- -GUgGCUCCUCGUCUaCGCGGCGCAcc -5'
31809 5' -59 NC_006938.1 + 13317 1.09 0.000576
Target:  5'- cCACCGAGGAGCAGAUGCGCCGCGUGGc -3'
miRNA:   3'- -GUGGCUCCUCGUCUACGCGGCGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.