miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31810 3' -52 NC_006938.1 + 40215 0.66 0.912921
Target:  5'- cCUcGG-CcGCGACACCCGGcugACcgGCg -3'
miRNA:   3'- -GAcCCaGaUGUUGUGGGCCa--UGuaCG- -5'
31810 3' -52 NC_006938.1 + 41257 0.66 0.899505
Target:  5'- -cGGGUCUugAACguugugACUCGGUcccGCGcgGCg -3'
miRNA:   3'- gaCCCAGAugUUG------UGGGCCA---UGUa-CG- -5'
31810 3' -52 NC_006938.1 + 15878 0.66 0.899505
Target:  5'- gUGGG-CUuccGCAACGCCUucuuccggaaGGUcuGCGUGCc -3'
miRNA:   3'- gACCCaGA---UGUUGUGGG----------CCA--UGUACG- -5'
31810 3' -52 NC_006938.1 + 1483 0.66 0.899505
Target:  5'- -aGGG-CgAgGugGCCCGGUACAuucucacaUGCg -3'
miRNA:   3'- gaCCCaGaUgUugUGGGCCAUGU--------ACG- -5'
31810 3' -52 NC_006938.1 + 24707 0.66 0.892383
Target:  5'- -gGGGUCgu-AGCGCCggaGGUagACGUGCu -3'
miRNA:   3'- gaCCCAGaugUUGUGGg--CCA--UGUACG- -5'
31810 3' -52 NC_006938.1 + 2009 0.67 0.877337
Target:  5'- gCUGGGUC-AC-GCAgCCGGUG-GUGUa -3'
miRNA:   3'- -GACCCAGaUGuUGUgGGCCAUgUACG- -5'
31810 3' -52 NC_006938.1 + 26337 0.67 0.869423
Target:  5'- gUGGG-CgGCGACacaggcgugaccACCCuGUACGUGCa -3'
miRNA:   3'- gACCCaGaUGUUG------------UGGGcCAUGUACG- -5'
31810 3' -52 NC_006938.1 + 16284 0.67 0.869423
Target:  5'- gCUGGGUCgGCGACAgCCCcugGCccGCg -3'
miRNA:   3'- -GACCCAGaUGUUGU-GGGccaUGuaCG- -5'
31810 3' -52 NC_006938.1 + 22665 0.67 0.861257
Target:  5'- -aGGGUgUcgACAuCACCCGGUGCccGa -3'
miRNA:   3'- gaCCCAgA--UGUuGUGGGCCAUGuaCg -5'
31810 3' -52 NC_006938.1 + 4602 0.69 0.787878
Target:  5'- cCUGGaUCUGCGGgACCaGGUACuggGCg -3'
miRNA:   3'- -GACCcAGAUGUUgUGGgCCAUGua-CG- -5'
31810 3' -52 NC_006938.1 + 15863 0.69 0.757335
Target:  5'- gUGGGcUCUGacACACCggccaGGUACAUGUc -3'
miRNA:   3'- gACCC-AGAUguUGUGGg----CCAUGUACG- -5'
31810 3' -52 NC_006938.1 + 29421 0.71 0.648814
Target:  5'- gUGGGUgUcgcGCAcCACCCGGcGCAUGa -3'
miRNA:   3'- gACCCAgA---UGUuGUGGGCCaUGUACg -5'
31810 3' -52 NC_006938.1 + 39089 0.74 0.49599
Target:  5'- cCUGGcUCUuCGGC-CCCGGUGcCAUGCa -3'
miRNA:   3'- -GACCcAGAuGUUGuGGGCCAU-GUACG- -5'
31810 3' -52 NC_006938.1 + 14065 1.13 0.001347
Target:  5'- cCUGGGUCUACAACACCCGGUACAUGCg -3'
miRNA:   3'- -GACCCAGAUGUUGUGGGCCAUGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.