Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31810 | 5' | -58.4 | NC_006938.1 | + | 38029 | 0.71 | 0.310928 |
Target: 5'- -cGCCAGAgCcGACGCCUccaccgcCCUGGCCa -3' miRNA: 3'- gaUGGUCU-GcCUGCGGAu------GGACCGGa -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 39239 | 0.67 | 0.486532 |
Target: 5'- uUGCCu-GCGGACGCCUggcguuccACCUcGGUCg -3' miRNA: 3'- gAUGGucUGCCUGCGGA--------UGGA-CCGGa -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 42429 | 0.69 | 0.38365 |
Target: 5'- -gGCCGGAgcGACGCCUGCCacucccucGGCCg -3' miRNA: 3'- gaUGGUCUgcCUGCGGAUGGa-------CCGGa -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 44414 | 0.67 | 0.536408 |
Target: 5'- -gGCCGGugGGGCauucagcgcggcaGCUaacccaacggACCUGGCCUu -3' miRNA: 3'- gaUGGUCugCCUG-------------CGGa---------UGGACCGGA- -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 50821 | 0.72 | 0.278007 |
Target: 5'- -cGCCAGGCccugcgagagcuggaGGAUGCCaGCCUGuGCCUc -3' miRNA: 3'- gaUGGUCUG---------------CCUGCGGaUGGAC-CGGA- -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 55613 | 0.69 | 0.38365 |
Target: 5'- -cGCCgAGACGGAgagguCGCCgagGCgUGGCCc -3' miRNA: 3'- gaUGG-UCUGCCU-----GCGGa--UGgACCGGa -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 57690 | 0.66 | 0.583695 |
Target: 5'- --uCCAGGCGGAgaagagcaauuucucCgaGUCUGCUUGGCCUc -3' miRNA: 3'- gauGGUCUGCCU---------------G--CGGAUGGACCGGA- -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 58161 | 0.69 | 0.419401 |
Target: 5'- -aGCCAGgagcaguuccucGCGGACGCCaACgUGGCgCUc -3' miRNA: 3'- gaUGGUC------------UGCCUGCGGaUGgACCG-GA- -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 58571 | 0.67 | 0.496542 |
Target: 5'- -cAUCGGugGGGCGCUcgUGgaUGGCCUg -3' miRNA: 3'- gaUGGUCugCCUGCGG--AUggACCGGA- -5' |
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31810 | 5' | -58.4 | NC_006938.1 | + | 59507 | 0.68 | 0.476619 |
Target: 5'- uCUGgCGcGGCGGAUGCCaGCCUcguccgGGCCa -3' miRNA: 3'- -GAUgGU-CUGCCUGCGGaUGGA------CCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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