miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31810 5' -58.4 NC_006938.1 + 14101 1.08 0.000713
Target:  5'- gCUACCAGACGGACGCCUACCUGGCCUg -3'
miRNA:   3'- -GAUGGUCUGCCUGCGGAUGGACCGGA- -5'
31810 5' -58.4 NC_006938.1 + 35041 0.72 0.261963
Target:  5'- --uCCAGGaggaGGACGCCUcCCUGGaCCUc -3'
miRNA:   3'- gauGGUCUg---CCUGCGGAuGGACC-GGA- -5'
31810 5' -58.4 NC_006938.1 + 50821 0.72 0.278007
Target:  5'- -cGCCAGGCccugcgagagcuggaGGAUGCCaGCCUGuGCCUc -3'
miRNA:   3'- gaUGGUCUG---------------CCUGCGGaUGGAC-CGGA- -5'
31810 5' -58.4 NC_006938.1 + 38029 0.71 0.310928
Target:  5'- -cGCCAGAgCcGACGCCUccaccgcCCUGGCCa -3'
miRNA:   3'- gaUGGUCU-GcCUGCGGAu------GGACCGGa -5'
31810 5' -58.4 NC_006938.1 + 15762 0.7 0.366548
Target:  5'- -cGCCAGAC-GACaUgUACCUGGCCg -3'
miRNA:   3'- gaUGGUCUGcCUGcGgAUGGACCGGa -5'
31810 5' -58.4 NC_006938.1 + 42429 0.69 0.38365
Target:  5'- -gGCCGGAgcGACGCCUGCCacucccucGGCCg -3'
miRNA:   3'- gaUGGUCUgcCUGCGGAUGGa-------CCGGa -5'
31810 5' -58.4 NC_006938.1 + 55613 0.69 0.38365
Target:  5'- -cGCCgAGACGGAgagguCGCCgagGCgUGGCCc -3'
miRNA:   3'- gaUGG-UCUGCCU-----GCGGa--UGgACCGGa -5'
31810 5' -58.4 NC_006938.1 + 14610 0.69 0.38365
Target:  5'- cCUGCCAGAUGGcUGgCUGCCgacGGUCg -3'
miRNA:   3'- -GAUGGUCUGCCuGCgGAUGGa--CCGGa -5'
31810 5' -58.4 NC_006938.1 + 58161 0.69 0.419401
Target:  5'- -aGCCAGgagcaguuccucGCGGACGCCaACgUGGCgCUc -3'
miRNA:   3'- gaUGGUC------------UGCCUGCGGaUGgACCG-GA- -5'
31810 5' -58.4 NC_006938.1 + 9258 0.69 0.42865
Target:  5'- -cGCCAcGGCGGugGCCagAgCUGGCg- -3'
miRNA:   3'- gaUGGU-CUGCCugCGGa-UgGACCGga -5'
31810 5' -58.4 NC_006938.1 + 14332 0.68 0.463883
Target:  5'- -cGCCAGACGGAgcacccuccggcCGCCUGugucuuugucugucCCUGGgCa -3'
miRNA:   3'- gaUGGUCUGCCU------------GCGGAU--------------GGACCgGa -5'
31810 5' -58.4 NC_006938.1 + 59507 0.68 0.476619
Target:  5'- uCUGgCGcGGCGGAUGCCaGCCUcguccgGGCCa -3'
miRNA:   3'- -GAUgGU-CUGCCUGCGGaUGGA------CCGGa -5'
31810 5' -58.4 NC_006938.1 + 39239 0.67 0.486532
Target:  5'- uUGCCu-GCGGACGCCUggcguuccACCUcGGUCg -3'
miRNA:   3'- gAUGGucUGCCUGCGGA--------UGGA-CCGGa -5'
31810 5' -58.4 NC_006938.1 + 20441 0.67 0.496542
Target:  5'- cCUGgCGGGCGGACGC-UGCCaGGUg- -3'
miRNA:   3'- -GAUgGUCUGCCUGCGgAUGGaCCGga -5'
31810 5' -58.4 NC_006938.1 + 58571 0.67 0.496542
Target:  5'- -cAUCGGugGGGCGCUcgUGgaUGGCCUg -3'
miRNA:   3'- gaUGGUCugCCUGCGG--AUggACCGGA- -5'
31810 5' -58.4 NC_006938.1 + 37467 0.67 0.506643
Target:  5'- --gUCAGGCGaucGACGUCUGCCUGuGUCUu -3'
miRNA:   3'- gauGGUCUGC---CUGCGGAUGGAC-CGGA- -5'
31810 5' -58.4 NC_006938.1 + 19415 0.67 0.506643
Target:  5'- uUGCCAGGCGGGugaaGCCgaguaCUGGCa- -3'
miRNA:   3'- gAUGGUCUGCCUg---CGGaug--GACCGga -5'
31810 5' -58.4 NC_006938.1 + 670 0.67 0.527101
Target:  5'- --uCCAGGCGGA-GCCUcucggcACC-GGCCUc -3'
miRNA:   3'- gauGGUCUGCCUgCGGA------UGGaCCGGA- -5'
31810 5' -58.4 NC_006938.1 + 18508 0.67 0.536408
Target:  5'- uCUACCGgccggacGACGGugGCCU-CUgggcGGCCc -3'
miRNA:   3'- -GAUGGU-------CUGCCugCGGAuGGa---CCGGa -5'
31810 5' -58.4 NC_006938.1 + 44414 0.67 0.536408
Target:  5'- -gGCCGGugGGGCauucagcgcggcaGCUaacccaacggACCUGGCCUu -3'
miRNA:   3'- gaUGGUCugCCUG-------------CGGa---------UGGACCGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.