miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31811 3' -59.6 NC_006938.1 + 43175 0.66 0.511534
Target:  5'- cGGUGCCagugaaCGUCcAGCUGUagcucGUCCCGGu -3'
miRNA:   3'- cUCGCGGa-----GCGGuUCGACG-----UAGGGCC- -5'
31811 3' -59.6 NC_006938.1 + 25785 0.66 0.511534
Target:  5'- -cGCGCUccgUCGUUGAGCUGUggcaugaaGUCCCGu -3'
miRNA:   3'- cuCGCGG---AGCGGUUCGACG--------UAGGGCc -5'
31811 3' -59.6 NC_006938.1 + 41057 0.66 0.511534
Target:  5'- gGAGCGCaCUCGCCuccuccguGGCcGgGUCCuCGa -3'
miRNA:   3'- -CUCGCG-GAGCGGu-------UCGaCgUAGG-GCc -5'
31811 3' -59.6 NC_006938.1 + 1469 0.66 0.491447
Target:  5'- gGAGCuGCCUC-CCGagGGCgagGUggCCCGGu -3'
miRNA:   3'- -CUCG-CGGAGcGGU--UCGa--CGuaGGGCC- -5'
31811 3' -59.6 NC_006938.1 + 7319 0.67 0.471732
Target:  5'- aGAcCGCCaUUGUCuGGCUuCAUCCCGGa -3'
miRNA:   3'- -CUcGCGG-AGCGGuUCGAcGUAGGGCC- -5'
31811 3' -59.6 NC_006938.1 + 55406 0.67 0.471732
Target:  5'- cGGCGCgCUCGCC--GCagGCggCCUGGg -3'
miRNA:   3'- cUCGCG-GAGCGGuuCGa-CGuaGGGCC- -5'
31811 3' -59.6 NC_006938.1 + 18688 0.67 0.462026
Target:  5'- -uGCGCCgccucggacgCGCCGGGCaUGCcgcauAUCUCGGc -3'
miRNA:   3'- cuCGCGGa---------GCGGUUCG-ACG-----UAGGGCC- -5'
31811 3' -59.6 NC_006938.1 + 50707 0.67 0.462026
Target:  5'- cGAGCGCCcaagagGCaCAGGCUGgCAUCCUc- -3'
miRNA:   3'- -CUCGCGGag----CG-GUUCGAC-GUAGGGcc -5'
31811 3' -59.6 NC_006938.1 + 35190 0.67 0.462026
Target:  5'- gGAG-GUCaUCGCCAuGCUGCAcgaggucaUCUCGGa -3'
miRNA:   3'- -CUCgCGG-AGCGGUuCGACGU--------AGGGCC- -5'
31811 3' -59.6 NC_006938.1 + 18577 0.67 0.442936
Target:  5'- -uGCaCUUCGCCGAGauaUGCGgcaugCCCGGc -3'
miRNA:   3'- cuCGcGGAGCGGUUCg--ACGUa----GGGCC- -5'
31811 3' -59.6 NC_006938.1 + 23194 0.67 0.424299
Target:  5'- aGGCGCggcugagaaaCUUGCCGAGCUcuauccGCGUggCCCGGu -3'
miRNA:   3'- cUCGCG----------GAGCGGUUCGA------CGUA--GGGCC- -5'
31811 3' -59.6 NC_006938.1 + 20225 0.68 0.415158
Target:  5'- -uGCGCCUCGucCCAGcGCUGguUgUCGGa -3'
miRNA:   3'- cuCGCGGAGC--GGUU-CGACguAgGGCC- -5'
31811 3' -59.6 NC_006938.1 + 53609 0.68 0.371322
Target:  5'- -uGUGaCCUCGCCGAGUgUGC--CCCGGc -3'
miRNA:   3'- cuCGC-GGAGCGGUUCG-ACGuaGGGCC- -5'
31811 3' -59.6 NC_006938.1 + 24301 0.69 0.323038
Target:  5'- aAGCGCCUCcacgagguGCuCGacGGCcGCAUCCUGGa -3'
miRNA:   3'- cUCGCGGAG--------CG-GU--UCGaCGUAGGGCC- -5'
31811 3' -59.6 NC_006938.1 + 7581 0.7 0.31546
Target:  5'- aAGCaCCUgGCCGAGg-GCGUCUCGGg -3'
miRNA:   3'- cUCGcGGAgCGGUUCgaCGUAGGGCC- -5'
31811 3' -59.6 NC_006938.1 + 35893 0.7 0.308018
Target:  5'- aGAGCcgaccaauGCCaUCGCCAGGC-GCGUCaUCGGa -3'
miRNA:   3'- -CUCG--------CGG-AGCGGUUCGaCGUAG-GGCC- -5'
31811 3' -59.6 NC_006938.1 + 4337 0.7 0.286499
Target:  5'- gGAGacCGCgCUCGCCGAGCUGCGaaggCagaCGGa -3'
miRNA:   3'- -CUC--GCG-GAGCGGUUCGACGUa---Gg--GCC- -5'
31811 3' -59.6 NC_006938.1 + 49258 0.71 0.266182
Target:  5'- aGGCGCUcaUCGCCAAGaagaagucuCU-CAUCCCGGa -3'
miRNA:   3'- cUCGCGG--AGCGGUUC---------GAcGUAGGGCC- -5'
31811 3' -59.6 NC_006938.1 + 39195 0.71 0.247048
Target:  5'- gGAGC-CgaUGCCAAGCUGCAUggcaCCGGg -3'
miRNA:   3'- -CUCGcGgaGCGGUUCGACGUAg---GGCC- -5'
31811 3' -59.6 NC_006938.1 + 9857 0.72 0.206824
Target:  5'- cGAGCGCCUCgGCCGcguuggcgagGGCUGUgacacccaGUCCCa- -3'
miRNA:   3'- -CUCGCGGAG-CGGU----------UCGACG--------UAGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.