miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31811 5' -51.1 NC_006938.1 + 7160 0.66 0.929222
Target:  5'- aGUUCG-GGGAGGgAGGugGAGcCGGGg -3'
miRNA:   3'- -CAGGCaCUCUUCgUCUugUUCuGCCU- -5'
31811 5' -51.1 NC_006938.1 + 28274 0.66 0.91968
Target:  5'- cGUCUGUGGGAcgggagugcuguguGUAGGGCAGgGGCGGc -3'
miRNA:   3'- -CAGGCACUCUu-------------CGUCUUGUU-CUGCCu -5'
31811 5' -51.1 NC_006938.1 + 30718 0.66 0.91718
Target:  5'- -aCCG-GAgGAGGCAcaccugcuGGGCGAGugGGAg -3'
miRNA:   3'- caGGCaCU-CUUCGU--------CUUGUUCugCCU- -5'
31811 5' -51.1 NC_006938.1 + 24055 0.66 0.910726
Target:  5'- -gCCG-GAGAAGggcaaGGAGCGcGGCGGAu -3'
miRNA:   3'- caGGCaCUCUUCg----UCUUGUuCUGCCU- -5'
31811 5' -51.1 NC_006938.1 + 26765 0.67 0.896966
Target:  5'- cGUCUGaGGGAGGCAGA----GAUGGAg -3'
miRNA:   3'- -CAGGCaCUCUUCGUCUuguuCUGCCU- -5'
31811 5' -51.1 NC_006938.1 + 62311 0.67 0.889666
Target:  5'- uUCCGUGGGAAcuuGCcaauGGGCGGGGCGa- -3'
miRNA:   3'- cAGGCACUCUU---CGu---CUUGUUCUGCcu -5'
31811 5' -51.1 NC_006938.1 + 4321 0.67 0.873451
Target:  5'- -gCCGUGAucugguaGAGGCGGAGCAcguugacGAUGGGg -3'
miRNA:   3'- caGGCACU-------CUUCGUCUUGUu------CUGCCU- -5'
31811 5' -51.1 NC_006938.1 + 11603 0.68 0.857788
Target:  5'- uUCCGUcggGAGAAGCuGGACugguuccaguGGACGGu -3'
miRNA:   3'- cAGGCA---CUCUUCGuCUUGu---------UCUGCCu -5'
31811 5' -51.1 NC_006938.1 + 5729 0.68 0.848309
Target:  5'- cGUCUGUGcacgcgucccccaAGAAGgAGAaccGCGAGGCGGu -3'
miRNA:   3'- -CAGGCAC-------------UCUUCgUCU---UGUUCUGCCu -5'
31811 5' -51.1 NC_006938.1 + 13845 0.68 0.84034
Target:  5'- gGUCUGUGAGAAGgAGGGCuucGACa-- -3'
miRNA:   3'- -CAGGCACUCUUCgUCUUGuu-CUGccu -5'
31811 5' -51.1 NC_006938.1 + 52684 0.68 0.831268
Target:  5'- -cCCGUGGGGAGUGGGACGu--CGGc -3'
miRNA:   3'- caGGCACUCUUCGUCUUGUucuGCCu -5'
31811 5' -51.1 NC_006938.1 + 43429 0.71 0.708531
Target:  5'- -cCCGUGGGAGGCGgGGACAuacGCGGu -3'
miRNA:   3'- caGGCACUCUUCGU-CUUGUuc-UGCCu -5'
31811 5' -51.1 NC_006938.1 + 2978 0.71 0.707432
Target:  5'- uUgCGUGAGAAGCccAGAGCGGaccugauggaccuGACGGAc -3'
miRNA:   3'- cAgGCACUCUUCG--UCUUGUU-------------CUGCCU- -5'
31811 5' -51.1 NC_006938.1 + 14333 1.09 0.003164
Target:  5'- gGUCCGUGAGAAGCAGAACAAGACGGAc -3'
miRNA:   3'- -CAGGCACUCUUCGUCUUGUUCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.