miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31812 3' -52.6 NC_006938.1 + 51042 0.66 0.886993
Target:  5'- aACG-CCUgGCCgaUCGUCGGGAcGgUCg -3'
miRNA:   3'- -UGCuGGAgCGGa-AGCAGCUCUuCaAG- -5'
31812 3' -52.6 NC_006938.1 + 62553 0.66 0.879452
Target:  5'- cGCGACg-CGUCggCGgcCGAGGAGUUCc -3'
miRNA:   3'- -UGCUGgaGCGGaaGCa-GCUCUUCAAG- -5'
31812 3' -52.6 NC_006938.1 + 36536 0.66 0.879452
Target:  5'- cCGACCUgGCCcgUCG-CGAGAcg-UCg -3'
miRNA:   3'- uGCUGGAgCGGa-AGCaGCUCUucaAG- -5'
31812 3' -52.6 NC_006938.1 + 60878 0.66 0.879452
Target:  5'- gUGACC-CGCuCUUCGgCGAGGucguGUUCc -3'
miRNA:   3'- uGCUGGaGCG-GAAGCaGCUCUu---CAAG- -5'
31812 3' -52.6 NC_006938.1 + 11269 0.66 0.871654
Target:  5'- -aGGCCUCGg---CGUCGAGGAGg-- -3'
miRNA:   3'- ugCUGGAGCggaaGCAGCUCUUCaag -5'
31812 3' -52.6 NC_006938.1 + 1752 0.66 0.863605
Target:  5'- -aGGCCUUGuCCUugUCGUCG-GAGGUc- -3'
miRNA:   3'- ugCUGGAGC-GGA--AGCAGCuCUUCAag -5'
31812 3' -52.6 NC_006938.1 + 39504 0.67 0.855312
Target:  5'- aGCGACCaugUUGuCCUcCGUUGAGAAGa-- -3'
miRNA:   3'- -UGCUGG---AGC-GGAaGCAGCUCUUCaag -5'
31812 3' -52.6 NC_006938.1 + 40613 0.67 0.837139
Target:  5'- uCGAUCUCGCCgacguccUCGUCGuccGGAucggaggaagcggGGUUCg -3'
miRNA:   3'- uGCUGGAGCGGa------AGCAGC---UCU-------------UCAAG- -5'
31812 3' -52.6 NC_006938.1 + 6299 0.68 0.810484
Target:  5'- gUGugCUCGCCagcgugucUUCGUCGAGuGGgUCc -3'
miRNA:   3'- uGCugGAGCGG--------AAGCAGCUCuUCaAG- -5'
31812 3' -52.6 NC_006938.1 + 4826 0.68 0.771165
Target:  5'- uAUGACCUgGCac-CGgcCGAGGAGUUCg -3'
miRNA:   3'- -UGCUGGAgCGgaaGCa-GCUCUUCAAG- -5'
31812 3' -52.6 NC_006938.1 + 2263 0.68 0.771165
Target:  5'- gGCGAUCUucaCGUCUUCGUCGAucucGGAGg-- -3'
miRNA:   3'- -UGCUGGA---GCGGAAGCAGCU----CUUCaag -5'
31812 3' -52.6 NC_006938.1 + 49016 0.69 0.717774
Target:  5'- uCGAgaUCGUUUUCGUCGAGAuucaugcGGUUCu -3'
miRNA:   3'- uGCUggAGCGGAAGCAGCUCU-------UCAAG- -5'
31812 3' -52.6 NC_006938.1 + 52546 0.72 0.587062
Target:  5'- -gGAUCUCGCCggucggCGUCGucaccgcGAAGUUCa -3'
miRNA:   3'- ugCUGGAGCGGaa----GCAGCu------CUUCAAG- -5'
31812 3' -52.6 NC_006938.1 + 15281 1.1 0.001913
Target:  5'- cACGACCUCGCCUUCGUCGAGAAGUUCg -3'
miRNA:   3'- -UGCUGGAGCGGAAGCAGCUCUUCAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.