miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31812 5' -56 NC_006938.1 + 31032 0.66 0.76673
Target:  5'- gGcGUCCUUCUuggCCGccaGACGGAguGAGAUg -3'
miRNA:   3'- gC-CAGGAAGA---GGCug-CUGCCU--CUCUG- -5'
31812 5' -56 NC_006938.1 + 40077 0.66 0.730358
Target:  5'- aCGGUCCaUCgCCagacgugaagccgugGGCGACGGAGGuGAg -3'
miRNA:   3'- -GCCAGGaAGaGG---------------CUGCUGCCUCU-CUg -5'
31812 5' -56 NC_006938.1 + 15410 0.67 0.705409
Target:  5'- uGGUC--UCUCCGuCGuCGGAGAagGACc -3'
miRNA:   3'- gCCAGgaAGAGGCuGCuGCCUCU--CUG- -5'
31812 5' -56 NC_006938.1 + 14500 0.67 0.694889
Target:  5'- uCGGagaCCUUCUCCGAgGA-GGAGugcguccucugGGACg -3'
miRNA:   3'- -GCCa--GGAAGAGGCUgCUgCCUC-----------UCUG- -5'
31812 5' -56 NC_006938.1 + 30017 0.67 0.691722
Target:  5'- aCGGUCgUccCUCCGGCGAUaccgcugucugucaGcGGGAGGCg -3'
miRNA:   3'- -GCCAGgAa-GAGGCUGCUG--------------C-CUCUCUG- -5'
31812 5' -56 NC_006938.1 + 38419 0.67 0.670493
Target:  5'- aCGGgCCUUCUCUucagugagcugcugGACGuACGGAGuGAa -3'
miRNA:   3'- -GCCaGGAAGAGG--------------CUGC-UGCCUCuCUg -5'
31812 5' -56 NC_006938.1 + 19796 0.67 0.667296
Target:  5'- uGGUCCgggUCCGGCGGguccugcagaacccuCGGAG-GACa -3'
miRNA:   3'- gCCAGGaagAGGCUGCU---------------GCCUCuCUG- -5'
31812 5' -56 NC_006938.1 + 4522 0.67 0.663027
Target:  5'- uGGUCCcgcagaUCCaGGCGAUGGcgaGGGGACa -3'
miRNA:   3'- gCCAGGaag---AGG-CUGCUGCC---UCUCUG- -5'
31812 5' -56 NC_006938.1 + 42410 0.68 0.652339
Target:  5'- uCGaGUUCUUCgCCGACGcggcCGGAGcGACg -3'
miRNA:   3'- -GC-CAGGAAGaGGCUGCu---GCCUCuCUG- -5'
31812 5' -56 NC_006938.1 + 19335 0.68 0.620205
Target:  5'- aCGGUUCUUCaUgGACGcgGCGGAGgaGGGCa -3'
miRNA:   3'- -GCCAGGAAGaGgCUGC--UGCCUC--UCUG- -5'
31812 5' -56 NC_006938.1 + 45807 0.68 0.598816
Target:  5'- aGGcCCgugccacgUUCUCCGcgcagcccgcCGAUGGAGAGACg -3'
miRNA:   3'- gCCaGG--------AAGAGGCu---------GCUGCCUCUCUG- -5'
31812 5' -56 NC_006938.1 + 32192 0.69 0.588158
Target:  5'- --uUCCUgcCUCCGAUGGCGagguGGGAGACg -3'
miRNA:   3'- gccAGGAa-GAGGCUGCUGC----CUCUCUG- -5'
31812 5' -56 NC_006938.1 + 15505 0.71 0.436225
Target:  5'- aCGGUCgUUCggcaGGCGACGGAGAcggugGACu -3'
miRNA:   3'- -GCCAGgAAGagg-CUGCUGCCUCU-----CUG- -5'
31812 5' -56 NC_006938.1 + 55841 0.72 0.408531
Target:  5'- cCGGUUCUa---CGACGGCGGGGAGGa -3'
miRNA:   3'- -GCCAGGAagagGCUGCUGCCUCUCUg -5'
31812 5' -56 NC_006938.1 + 45914 0.74 0.324597
Target:  5'- aGGUCCUgaUCggagccUCGGCGGCGGAGAcGGCc -3'
miRNA:   3'- gCCAGGA--AGa-----GGCUGCUGCCUCU-CUG- -5'
31812 5' -56 NC_006938.1 + 15319 1.09 0.0013
Target:  5'- gCGGUCCUUCUCCGACGACGGAGAGACc -3'
miRNA:   3'- -GCCAGGAAGAGGCUGCUGCCUCUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.