miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31813 3' -53.6 NC_006938.1 + 58041 0.66 0.863011
Target:  5'- cCCACCCGUCc----UGGaaGCCAGACa -3'
miRNA:   3'- -GGUGGGCGGcagaaACUgaUGGUCUG- -5'
31813 3' -53.6 NC_006938.1 + 15754 0.66 0.846304
Target:  5'- aCACCUGCCGUacc-GACcgACCucGACg -3'
miRNA:   3'- gGUGGGCGGCAgaaaCUGa-UGGu-CUG- -5'
31813 3' -53.6 NC_006938.1 + 55926 0.66 0.819592
Target:  5'- uCCucCCCGCCGUCguaGA--ACCGGAa -3'
miRNA:   3'- -GGu-GGGCGGCAGaaaCUgaUGGUCUg -5'
31813 3' -53.6 NC_006938.1 + 55730 0.66 0.81867
Target:  5'- cCUugCCGCCuccgcugGUCUcugugugcUUGACcucgcgaaUGCCAGACg -3'
miRNA:   3'- -GGugGGCGG-------CAGA--------AACUG--------AUGGUCUG- -5'
31813 3' -53.6 NC_006938.1 + 3479 0.67 0.810284
Target:  5'- aCCAgCCGCuCGUCccucccgagUGGCacgACCAGAUc -3'
miRNA:   3'- -GGUgGGCG-GCAGaa-------ACUGa--UGGUCUG- -5'
31813 3' -53.6 NC_006938.1 + 43650 0.67 0.80079
Target:  5'- -aGCCCGUCGUCUUggaGGgaACCuGAUg -3'
miRNA:   3'- ggUGGGCGGCAGAAa--CUgaUGGuCUG- -5'
31813 3' -53.6 NC_006938.1 + 59896 0.67 0.781288
Target:  5'- aCACCagGCCGUCUUUGGaaGCaAGAUa -3'
miRNA:   3'- gGUGGg-CGGCAGAAACUgaUGgUCUG- -5'
31813 3' -53.6 NC_006938.1 + 14077 0.67 0.781288
Target:  5'- aCACCCGguacaugCGUgcccugGGCUACCAGACg -3'
miRNA:   3'- gGUGGGCg------GCAgaaa--CUGAUGGUCUG- -5'
31813 3' -53.6 NC_006938.1 + 7244 0.67 0.770294
Target:  5'- gCCAUUCGCCGUCUccagcgggagcgcUcgGACcgcuCCGGACg -3'
miRNA:   3'- -GGUGGGCGGCAGA-------------Aa-CUGau--GGUCUG- -5'
31813 3' -53.6 NC_006938.1 + 14315 0.68 0.765239
Target:  5'- uCCGgCCGCCuguGUCUUUGucugucccugggcauACUcguACCAGACc -3'
miRNA:   3'- -GGUgGGCGG---CAGAAAC---------------UGA---UGGUCUG- -5'
31813 3' -53.6 NC_006938.1 + 13296 0.68 0.761171
Target:  5'- -aGCCCGcCCGUCUcgGA---CCGGACg -3'
miRNA:   3'- ggUGGGC-GGCAGAaaCUgauGGUCUG- -5'
31813 3' -53.6 NC_006938.1 + 37692 0.68 0.737392
Target:  5'- gCCACCUgucgcuccagcgggGCCGUCUgggUGGCgauggUGCCcuGGACa -3'
miRNA:   3'- -GGUGGG--------------CGGCAGAa--ACUG-----AUGG--UCUG- -5'
31813 3' -53.6 NC_006938.1 + 5514 0.68 0.730039
Target:  5'- gCCACCCGCCG-C--UGGCagcaaUGCCAaGGCc -3'
miRNA:   3'- -GGUGGGCGGCaGaaACUG-----AUGGU-CUG- -5'
31813 3' -53.6 NC_006938.1 + 56572 0.68 0.719451
Target:  5'- uCCAgugacCCCGaCCGUCUggUUGAggUGCCAGAUg -3'
miRNA:   3'- -GGU-----GGGC-GGCAGA--AACUg-AUGGUCUG- -5'
31813 3' -53.6 NC_006938.1 + 17599 0.69 0.698031
Target:  5'- uCgGCCCGCCGUCgaUGGCaaagccauaGCCAG-Cg -3'
miRNA:   3'- -GgUGGGCGGCAGaaACUGa--------UGGUCuG- -5'
31813 3' -53.6 NC_006938.1 + 50945 0.69 0.68722
Target:  5'- uUCGCCaCGaCCGUCcc-GACgaucgGCCAGGCg -3'
miRNA:   3'- -GGUGG-GC-GGCAGaaaCUGa----UGGUCUG- -5'
31813 3' -53.6 NC_006938.1 + 46163 0.69 0.654515
Target:  5'- cCgGCCgUGCCGUCUgccugGGCcACCAGAUu -3'
miRNA:   3'- -GgUGG-GCGGCAGAaa---CUGaUGGUCUG- -5'
31813 3' -53.6 NC_006938.1 + 5094 0.7 0.599726
Target:  5'- -gACCCuGCCGUUgUUGAC-AUCGGACg -3'
miRNA:   3'- ggUGGG-CGGCAGaAACUGaUGGUCUG- -5'
31813 3' -53.6 NC_006938.1 + 16938 1.12 0.001258
Target:  5'- cCCACCCGCCGUCUUUGACUACCAGACu -3'
miRNA:   3'- -GGUGGGCGGCAGAAACUGAUGGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.