Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31813 | 3' | -53.6 | NC_006938.1 | + | 16938 | 1.12 | 0.001258 |
Target: 5'- cCCACCCGCCGUCUUUGACUACCAGACu -3' miRNA: 3'- -GGUGGGCGGCAGAAACUGAUGGUCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 5094 | 0.7 | 0.599726 |
Target: 5'- -gACCCuGCCGUUgUUGAC-AUCGGACg -3' miRNA: 3'- ggUGGG-CGGCAGaAACUGaUGGUCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 46163 | 0.69 | 0.654515 |
Target: 5'- cCgGCCgUGCCGUCUgccugGGCcACCAGAUu -3' miRNA: 3'- -GgUGG-GCGGCAGAaa---CUGaUGGUCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 17599 | 0.69 | 0.698031 |
Target: 5'- uCgGCCCGCCGUCgaUGGCaaagccauaGCCAG-Cg -3' miRNA: 3'- -GgUGGGCGGCAGaaACUGa--------UGGUCuG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 50945 | 0.69 | 0.68722 |
Target: 5'- uUCGCCaCGaCCGUCcc-GACgaucgGCCAGGCg -3' miRNA: 3'- -GGUGG-GC-GGCAGaaaCUGa----UGGUCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 5514 | 0.68 | 0.730039 |
Target: 5'- gCCACCCGCCG-C--UGGCagcaaUGCCAaGGCc -3' miRNA: 3'- -GGUGGGCGGCaGaaACUG-----AUGGU-CUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 56572 | 0.68 | 0.719451 |
Target: 5'- uCCAgugacCCCGaCCGUCUggUUGAggUGCCAGAUg -3' miRNA: 3'- -GGU-----GGGC-GGCAGA--AACUg-AUGGUCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 37692 | 0.68 | 0.737392 |
Target: 5'- gCCACCUgucgcuccagcgggGCCGUCUgggUGGCgauggUGCCcuGGACa -3' miRNA: 3'- -GGUGGG--------------CGGCAGAa--ACUG-----AUGG--UCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 13296 | 0.68 | 0.761171 |
Target: 5'- -aGCCCGcCCGUCUcgGA---CCGGACg -3' miRNA: 3'- ggUGGGC-GGCAGAaaCUgauGGUCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 14315 | 0.68 | 0.765239 |
Target: 5'- uCCGgCCGCCuguGUCUUUGucugucccugggcauACUcguACCAGACc -3' miRNA: 3'- -GGUgGGCGG---CAGAAAC---------------UGA---UGGUCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 7244 | 0.67 | 0.770294 |
Target: 5'- gCCAUUCGCCGUCUccagcgggagcgcUcgGACcgcuCCGGACg -3' miRNA: 3'- -GGUGGGCGGCAGA-------------Aa-CUGau--GGUCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 59896 | 0.67 | 0.781288 |
Target: 5'- aCACCagGCCGUCUUUGGaaGCaAGAUa -3' miRNA: 3'- gGUGGg-CGGCAGAAACUgaUGgUCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 3479 | 0.67 | 0.810284 |
Target: 5'- aCCAgCCGCuCGUCccucccgagUGGCacgACCAGAUc -3' miRNA: 3'- -GGUgGGCG-GCAGaa-------ACUGa--UGGUCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 43650 | 0.67 | 0.80079 |
Target: 5'- -aGCCCGUCGUCUUggaGGgaACCuGAUg -3' miRNA: 3'- ggUGGGCGGCAGAAa--CUgaUGGuCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 14077 | 0.67 | 0.781288 |
Target: 5'- aCACCCGguacaugCGUgcccugGGCUACCAGACg -3' miRNA: 3'- gGUGGGCg------GCAgaaa--CUGAUGGUCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 55926 | 0.66 | 0.819592 |
Target: 5'- uCCucCCCGCCGUCguaGA--ACCGGAa -3' miRNA: 3'- -GGu-GGGCGGCAGaaaCUgaUGGUCUg -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 15754 | 0.66 | 0.846304 |
Target: 5'- aCACCUGCCGUacc-GACcgACCucGACg -3' miRNA: 3'- gGUGGGCGGCAgaaaCUGa-UGGu-CUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 58041 | 0.66 | 0.863011 |
Target: 5'- cCCACCCGUCc----UGGaaGCCAGACa -3' miRNA: 3'- -GGUGGGCGGcagaaACUgaUGGUCUG- -5' |
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31813 | 3' | -53.6 | NC_006938.1 | + | 55730 | 0.66 | 0.81867 |
Target: 5'- cCUugCCGCCuccgcugGUCUcugugugcUUGACcucgcgaaUGCCAGACg -3' miRNA: 3'- -GGugGGCGG-------CAGA--------AACUG--------AUGGUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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