miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31813 5' -55.2 NC_006938.1 + 53459 0.67 0.712455
Target:  5'- -cGCCGAgauccgcauUGGCAUCGucaacuACGCGGACcugucgcaggGACa -3'
miRNA:   3'- caCGGUU---------GCCGUAGU------UGCGCCUG----------CUG- -5'
31813 5' -55.2 NC_006938.1 + 24315 0.67 0.712455
Target:  5'- gGUGCuCGACGGCcgCAuCcUGGAgGACg -3'
miRNA:   3'- -CACG-GUUGCCGuaGUuGcGCCUgCUG- -5'
31813 5' -55.2 NC_006938.1 + 30123 0.67 0.701747
Target:  5'- cUGCCug-GGCGUUcGCGCGGGCa-- -3'
miRNA:   3'- cACGGuugCCGUAGuUGCGCCUGcug -5'
31813 5' -55.2 NC_006938.1 + 37842 0.67 0.701747
Target:  5'- -gGCCAGCaucagGGCAUCGucgugggccuCGgGGAUGACc -3'
miRNA:   3'- caCGGUUG-----CCGUAGUu---------GCgCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 54107 0.67 0.701747
Target:  5'- -aGCCcaGACGGCAgcuuugcCAACcuguccucuGUGGACGGCg -3'
miRNA:   3'- caCGG--UUGCCGUa------GUUG---------CGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 49673 0.67 0.690972
Target:  5'- -gGCgAGCGGCuguagCAGCGUucaGGAUGGCc -3'
miRNA:   3'- caCGgUUGCCGua---GUUGCG---CCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 32804 0.67 0.690972
Target:  5'- -gGCCAcGCGGCAgagCugcuUGCGGAuCGGCu -3'
miRNA:   3'- caCGGU-UGCCGUa--Guu--GCGCCU-GCUG- -5'
31813 5' -55.2 NC_006938.1 + 15536 0.67 0.68881
Target:  5'- -gGCCAGCGGCccacaucugcacgaCGACGCGacggucguucggcaGGCGACg -3'
miRNA:   3'- caCGGUUGCCGua------------GUUGCGC--------------CUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 5594 0.67 0.687728
Target:  5'- cUGCCAGCGGCGggUGGCGCGuccuggugguccucGGCGuACu -3'
miRNA:   3'- cACGGUUGCCGUa-GUUGCGC--------------CUGC-UG- -5'
31813 5' -55.2 NC_006938.1 + 10112 0.67 0.680141
Target:  5'- aUGCCgGACGGUGUUcGCacggagcggGUGGACGACu -3'
miRNA:   3'- cACGG-UUGCCGUAGuUG---------CGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 4438 0.67 0.680141
Target:  5'- uUGCCGugcgcuuugACGGgucCAUCAGCGaGGACGAg -3'
miRNA:   3'- cACGGU---------UGCC---GUAGUUGCgCCUGCUg -5'
31813 5' -55.2 NC_006938.1 + 32652 0.67 0.669265
Target:  5'- -aGCCAaggACGGCAUCAuC-CGGAgGAa -3'
miRNA:   3'- caCGGU---UGCCGUAGUuGcGCCUgCUg -5'
31813 5' -55.2 NC_006938.1 + 18288 0.67 0.665995
Target:  5'- -cGUCAuCGGCGuUCAgcugguguccggccGCGCGGAgGGCg -3'
miRNA:   3'- caCGGUuGCCGU-AGU--------------UGCGCCUgCUG- -5'
31813 5' -55.2 NC_006938.1 + 60599 0.67 0.665995
Target:  5'- -cGCUucGACGGUggCAACGCcaacuucgccaucgGGGCGGCg -3'
miRNA:   3'- caCGG--UUGCCGuaGUUGCG--------------CCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 23993 0.67 0.658354
Target:  5'- gGUGCC--UGGU-UCGACGaGGACGGCa -3'
miRNA:   3'- -CACGGuuGCCGuAGUUGCgCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 26653 0.67 0.658354
Target:  5'- aGUGCCAgaACGGCGagGGcCGCuGGACcGCg -3'
miRNA:   3'- -CACGGU--UGCCGUagUU-GCG-CCUGcUG- -5'
31813 5' -55.2 NC_006938.1 + 39675 0.67 0.658354
Target:  5'- cGUGCCAGUGGCggCGACGuCGuccgagaagucGACGGCc -3'
miRNA:   3'- -CACGGUUGCCGuaGUUGC-GC-----------CUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 20466 0.67 0.658354
Target:  5'- aGUGCUccacucggAGCGGCguGUCcuCGCGGACcGGCc -3'
miRNA:   3'- -CACGG--------UUGCCG--UAGuuGCGCCUG-CUG- -5'
31813 5' -55.2 NC_006938.1 + 9756 0.67 0.658354
Target:  5'- -cGaCAACGuuGUCcauGGCGCGGACGACc -3'
miRNA:   3'- caCgGUUGCcgUAG---UUGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 17676 0.68 0.651796
Target:  5'- -gGCCGAgGGCAUCGACaugccgcuugucaagGCGuaucGCGACg -3'
miRNA:   3'- caCGGUUgCCGUAGUUG---------------CGCc---UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.