miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31814 3' -53.5 NC_006938.1 + 26933 0.65 0.8587
Target:  5'- gGCGCGgcccgugacuGGGCCUGUCCcuccGGAGu -3'
miRNA:   3'- -UGCGUaagu------CCUGGACAGGuu--CCUCc -5'
31814 3' -53.5 NC_006938.1 + 13403 0.66 0.853685
Target:  5'- cGCGCGUUCauacAGGACgccaCCGAGGAGc -3'
miRNA:   3'- -UGCGUAAG----UCCUGgacaGGUUCCUCc -5'
31814 3' -53.5 NC_006938.1 + 14499 0.66 0.853685
Target:  5'- -----gUCGGaGACCUucUCCGAGGAGGa -3'
miRNA:   3'- ugcguaAGUC-CUGGAc-AGGUUCCUCC- -5'
31814 3' -53.5 NC_006938.1 + 34706 0.66 0.845143
Target:  5'- -aGCug-CuGGACUccgUGUCCAGGGAGcGg -3'
miRNA:   3'- ugCGuaaGuCCUGG---ACAGGUUCCUC-C- -5'
31814 3' -53.5 NC_006938.1 + 24448 0.66 0.845143
Target:  5'- cGCGCuga-GGGugCUccccGUCCAGGGAcuGGa -3'
miRNA:   3'- -UGCGuaagUCCugGA----CAGGUUCCU--CC- -5'
31814 3' -53.5 NC_006938.1 + 34543 0.66 0.836377
Target:  5'- -gGUAgaucgUCAGGACgaGguuggagagcCCAAGGAGGg -3'
miRNA:   3'- ugCGUa----AGUCCUGgaCa---------GGUUCCUCC- -5'
31814 3' -53.5 NC_006938.1 + 61174 0.66 0.827395
Target:  5'- -aGCAccgUCAGGuCCgg-CCAGGGAGa -3'
miRNA:   3'- ugCGUa--AGUCCuGGacaGGUUCCUCc -5'
31814 3' -53.5 NC_006938.1 + 17550 0.66 0.818207
Target:  5'- cCGCAcggaGGGACCUGUguccuUCAAGuGGGGa -3'
miRNA:   3'- uGCGUaag-UCCUGGACA-----GGUUC-CUCC- -5'
31814 3' -53.5 NC_006938.1 + 19940 0.66 0.818207
Target:  5'- -gGCGUggAGGAC---UCCAGGGAGGc -3'
miRNA:   3'- ugCGUAagUCCUGgacAGGUUCCUCC- -5'
31814 3' -53.5 NC_006938.1 + 40758 0.67 0.803102
Target:  5'- gGCGCAgcccaacCGGGACCUcgacggugucaaGgccguccuccagcggUCCAAGGAGGc -3'
miRNA:   3'- -UGCGUaa-----GUCCUGGA------------C---------------AGGUUCCUCC- -5'
31814 3' -53.5 NC_006938.1 + 35153 0.67 0.769534
Target:  5'- --aUcgUCAGGguuggacauGCCgagGUCCAGGGAGGc -3'
miRNA:   3'- ugcGuaAGUCC---------UGGa--CAGGUUCCUCC- -5'
31814 3' -53.5 NC_006938.1 + 52204 0.68 0.759329
Target:  5'- -gGCAUcuUCGGcGGCCUGUuuGGuGGAGGc -3'
miRNA:   3'- ugCGUA--AGUC-CUGGACAggUU-CCUCC- -5'
31814 3' -53.5 NC_006938.1 + 53468 0.68 0.753143
Target:  5'- cCGCAUUgGcaucgucaacuacgcGGACCUGUCgCAGGGAc- -3'
miRNA:   3'- uGCGUAAgU---------------CCUGGACAG-GUUCCUcc -5'
31814 3' -53.5 NC_006938.1 + 38611 0.68 0.748994
Target:  5'- -gGCGUUCAGGGCggcgaUGUCCGcguAGGAc- -3'
miRNA:   3'- ugCGUAAGUCCUGg----ACAGGU---UCCUcc -5'
31814 3' -53.5 NC_006938.1 + 17242 0.68 0.738539
Target:  5'- gGCGaucucCAGGuCCUGUCCGGcGAGGa -3'
miRNA:   3'- -UGCguaa-GUCCuGGACAGGUUcCUCC- -5'
31814 3' -53.5 NC_006938.1 + 34842 0.7 0.607919
Target:  5'- cACGUGgaUCGGGGCCaaccCCGAGGAGGu -3'
miRNA:   3'- -UGCGUa-AGUCCUGGaca-GGUUCCUCC- -5'
31814 3' -53.5 NC_006938.1 + 6626 0.71 0.553361
Target:  5'- gGCGCAUcgCuGGACUguugUGUCCGAGGAc- -3'
miRNA:   3'- -UGCGUAa-GuCCUGG----ACAGGUUCCUcc -5'
31814 3' -53.5 NC_006938.1 + 47134 0.71 0.53192
Target:  5'- gAUGCuuUUCAGGGCCaGUCCAcaccGGGuGGc -3'
miRNA:   3'- -UGCGu-AAGUCCUGGaCAGGU----UCCuCC- -5'
31814 3' -53.5 NC_006938.1 + 17115 1.1 0.001535
Target:  5'- gACGCAUUCAGGACCUGUCCAAGGAGGu -3'
miRNA:   3'- -UGCGUAAGUCCUGGACAGGUUCCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.