Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31815 | 3' | -54.6 | NC_006938.1 | + | 1715 | 0.66 | 0.782956 |
Target: 5'- aGGCuucaccGACUUGGCGGAG---GAGuAGGAu -3' miRNA: 3'- -CCG------UUGGACCGCCUCuagCUCuUCCU- -5' |
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31815 | 3' | -54.6 | NC_006938.1 | + | 18041 | 0.66 | 0.806096 |
Target: 5'- cGGCGucaaggucgacgaggACC-GGCucauGGAGGUCGAGAuccgagcgacgaAGGAg -3' miRNA: 3'- -CCGU---------------UGGaCCG----CCUCUAGCUCU------------UCCU- -5' |
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31815 | 3' | -54.6 | NC_006938.1 | + | 27813 | 0.67 | 0.752802 |
Target: 5'- cGCGuacGCgUGGCGGAagagGAUCGugccaagcaaagAGAAGGAg -3' miRNA: 3'- cCGU---UGgACCGCCU----CUAGC------------UCUUCCU- -5' |
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31815 | 3' | -54.6 | NC_006938.1 | + | 27460 | 0.67 | 0.742494 |
Target: 5'- aGCGGCCgaGGagcacgaGGAGAUgGAGAGcGGAu -3' miRNA: 3'- cCGUUGGa-CCg------CCUCUAgCUCUU-CCU- -5' |
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31815 | 3' | -54.6 | NC_006938.1 | + | 2139 | 0.67 | 0.759946 |
Target: 5'- uGGCAGCCgucaacuggGGCGacgugcacgccuccGAGAUCGAcGAAGa- -3' miRNA: 3'- -CCGUUGGa--------CCGC--------------CUCUAGCU-CUUCcu -5' |
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31815 | 3' | -54.6 | NC_006938.1 | + | 23258 | 0.67 | 0.762989 |
Target: 5'- cGGCGACCgaGGCGGAcGUCcAGGAcGAc -3' miRNA: 3'- -CCGUUGGa-CCGCCUcUAGcUCUUcCU- -5' |
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31815 | 3' | -54.6 | NC_006938.1 | + | 51371 | 0.69 | 0.628658 |
Target: 5'- uGGCGAgCUGGCGGAacgcgccaccggccuGGUUGAGcuGGu -3' miRNA: 3'- -CCGUUgGACCGCCU---------------CUAGCUCuuCCu -5' |
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31815 | 3' | -54.6 | NC_006938.1 | + | 11576 | 0.69 | 0.601408 |
Target: 5'- gGGCGGCaggUGGCGGAGGccuuuggcuuccgUCGGGAGaagcuGGAc -3' miRNA: 3'- -CCGUUGg--ACCGCCUCU-------------AGCUCUU-----CCU- -5' |
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31815 | 3' | -54.6 | NC_006938.1 | + | 24064 | 0.69 | 0.646117 |
Target: 5'- gGGCAaggaGCgC-GGCGGAuucAUCGGGAGGGAc -3' miRNA: 3'- -CCGU----UG-GaCCGCCUc--UAGCUCUUCCU- -5' |
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31815 | 3' | -54.6 | NC_006938.1 | + | 8982 | 0.71 | 0.47497 |
Target: 5'- uGGCGGCCUGgacGCGGcccgcuggcaugaAGcgcauGUCGAGGAGGAu -3' miRNA: 3'- -CCGUUGGAC---CGCC-------------UC-----UAGCUCUUCCU- -5' |
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31815 | 3' | -54.6 | NC_006938.1 | + | 30592 | 0.71 | 0.486072 |
Target: 5'- gGGCGGCUacaagGGCugGGAGAcCGAGGAGGu -3' miRNA: 3'- -CCGUUGGa----CCG--CCUCUaGCUCUUCCu -5' |
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31815 | 3' | -54.6 | NC_006938.1 | + | 52212 | 0.73 | 0.390298 |
Target: 5'- cGGCGGCCUguuugguggaGGCGGAGGgcucuUUGGuGGAGGAg -3' miRNA: 3'- -CCGUUGGA----------CCGCCUCU-----AGCU-CUUCCU- -5' |
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31815 | 3' | -54.6 | NC_006938.1 | + | 17230 | 1.11 | 0.001033 |
Target: 5'- gGGCAACCUGGCGGAGAUCGAGAAGGAg -3' miRNA: 3'- -CCGUUGGACCGCCUCUAGCUCUUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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