miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31816 3' -53.7 NC_006938.1 + 1834 0.66 0.742305
Target:  5'- gAGCAGG-CCUGggGcCAGUUGCCAccGg -3'
miRNA:   3'- -UUGUUCgGGACuaC-GUCGACGGUuaC- -5'
31816 3' -53.7 NC_006938.1 + 57228 0.66 0.742305
Target:  5'- gGACAAGUCCUccacGAUGgAGCUGagagCGAUGc -3'
miRNA:   3'- -UUGUUCGGGA----CUACgUCGACg---GUUAC- -5'
31816 3' -53.7 NC_006938.1 + 24546 0.66 0.731425
Target:  5'- aGACAGGUCCgccGccGCGcGCUGCCAGa- -3'
miRNA:   3'- -UUGUUCGGGa--CuaCGU-CGACGGUUac -5'
31816 3' -53.7 NC_006938.1 + 30108 0.67 0.72044
Target:  5'- uGGCGAGgCCUGGcucaUG-AGCUGCCAcgGc -3'
miRNA:   3'- -UUGUUCgGGACU----ACgUCGACGGUuaC- -5'
31816 3' -53.7 NC_006938.1 + 53911 0.67 0.72044
Target:  5'- gAGCGcGGCCUcGGUGCccaGGgUGCCAGUGg -3'
miRNA:   3'- -UUGU-UCGGGaCUACG---UCgACGGUUAC- -5'
31816 3' -53.7 NC_006938.1 + 14590 0.67 0.675683
Target:  5'- gAGCGGGaCCUGAUgGCAGacCUGCCAGa- -3'
miRNA:   3'- -UUGUUCgGGACUA-CGUC--GACGGUUac -5'
31816 3' -53.7 NC_006938.1 + 39696 0.67 0.675683
Target:  5'- gGGCucGGCUgUGAUGguCAGCgUGCCAGUGg -3'
miRNA:   3'- -UUGu-UCGGgACUAC--GUCG-ACGGUUAC- -5'
31816 3' -53.7 NC_006938.1 + 275 0.69 0.573491
Target:  5'- cGACAgccAGCUUUGAUGUuugggaucaAGCUGCCAAa- -3'
miRNA:   3'- -UUGU---UCGGGACUACG---------UCGACGGUUac -5'
31816 3' -53.7 NC_006938.1 + 17197 0.69 0.562262
Target:  5'- gGACAGGUCCUGaAUGCGucGCUGCUu--- -3'
miRNA:   3'- -UUGUUCGGGAC-UACGU--CGACGGuuac -5'
31816 3' -53.7 NC_006938.1 + 63632 0.7 0.496435
Target:  5'- -uCAAGCCg-GGUgugucuuccaggGCAGCUGCCAGUGc -3'
miRNA:   3'- uuGUUCGGgaCUA------------CGUCGACGGUUAC- -5'
31816 3' -53.7 NC_006938.1 + 37759 0.7 0.485789
Target:  5'- cGACGAuGCCCUGAUGCug--GCCGAUc -3'
miRNA:   3'- -UUGUU-CGGGACUACGucgaCGGUUAc -5'
31816 3' -53.7 NC_006938.1 + 17332 1.06 0.001849
Target:  5'- gAACAAGCCCUGAUGCAGCUGCCAAUGu -3'
miRNA:   3'- -UUGUUCGGGACUACGUCGACGGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.