miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31816 5' -58.6 NC_006938.1 + 34691 0.66 0.555409
Target:  5'- cCCAGaagGGCggacAGCUGCUGGACuccGUGUCc -3'
miRNA:   3'- aGGUCga-CCG----UCGGCGGUCUG---UACAG- -5'
31816 5' -58.6 NC_006938.1 + 35735 0.68 0.388045
Target:  5'- gUCCAGCUGGaccugacccuucCGGCCGCC-GACcugcugcaGUCg -3'
miRNA:   3'- -AGGUCGACC------------GUCGGCGGuCUGua------CAG- -5'
31816 5' -58.6 NC_006938.1 + 36745 0.66 0.523836
Target:  5'- aCCGGCUGGCucgacAGCUugGuCCAGGCGUcGUg -3'
miRNA:   3'- aGGUCGACCG-----UCGG--C-GGUCUGUA-CAg -5'
31816 5' -58.6 NC_006938.1 + 40569 0.66 0.513462
Target:  5'- gUUCGGCUGGCccuggucGuCCGUCGGAggaGUGUCg -3'
miRNA:   3'- -AGGUCGACCGu------C-GGCGGUCUg--UACAG- -5'
31816 5' -58.6 NC_006938.1 + 41580 0.66 0.544816
Target:  5'- -gCGGCUGcGCGGCgGCCuGGGCAaaGUCc -3'
miRNA:   3'- agGUCGAC-CGUCGgCGG-UCUGUa-CAG- -5'
31816 5' -58.6 NC_006938.1 + 45470 0.66 0.513462
Target:  5'- aCgGGUUGGCAGUCgcggguGCCGGACuuacaGUCg -3'
miRNA:   3'- aGgUCGACCGUCGG------CGGUCUGua---CAG- -5'
31816 5' -58.6 NC_006938.1 + 49473 0.67 0.472869
Target:  5'- aUCCAGUcGGCcGCCGUCGacGACAccGUCu -3'
miRNA:   3'- -AGGUCGaCCGuCGGCGGU--CUGUa-CAG- -5'
31816 5' -58.6 NC_006938.1 + 50218 0.66 0.555409
Target:  5'- aCCGGCUGGCuuuGUCGacaccgccauCCAGGCcgggGUCc -3'
miRNA:   3'- aGGUCGACCGu--CGGC----------GGUCUGua--CAG- -5'
31816 5' -58.6 NC_006938.1 + 52139 0.69 0.337334
Target:  5'- cCCAGCUGGCAGCCaaCCAGcuccuGCAg--- -3'
miRNA:   3'- aGGUCGACCGUCGGc-GGUC-----UGUacag -5'
31816 5' -58.6 NC_006938.1 + 52211 0.67 0.492974
Target:  5'- gCCAGCUGGgucaGGUCGgCCAGcagggaGCGUGUg -3'
miRNA:   3'- aGGUCGACCg---UCGGC-GGUC------UGUACAg -5'
31816 5' -58.6 NC_006938.1 + 53279 0.66 0.555409
Target:  5'- cUCCAGgUGGgucugcaGGCUGCCAGuuauUGUCu -3'
miRNA:   3'- -AGGUCgACCg------UCGGCGGUCugu-ACAG- -5'
31816 5' -58.6 NC_006938.1 + 59592 0.7 0.313849
Target:  5'- --aGGCUGGCAuccGCCgcGCCAGACAgguucGUCg -3'
miRNA:   3'- aggUCGACCGU---CGG--CGGUCUGUa----CAG- -5'
31816 5' -58.6 NC_006938.1 + 60808 0.67 0.472869
Target:  5'- aCCGGCUGGUgucuGGUCGaCCAcGACccUGUCu -3'
miRNA:   3'- aGGUCGACCG----UCGGC-GGU-CUGu-ACAG- -5'
31816 5' -58.6 NC_006938.1 + 63616 0.7 0.313849
Target:  5'- uUCCAG--GGCAGCUGCCAGuGCG-GUCc -3'
miRNA:   3'- -AGGUCgaCCGUCGGCGGUC-UGUaCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.