miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31818 3' -56.5 NC_006938.1 + 13730 0.66 0.669265
Target:  5'- aUGAGCAUGuCAGC-GCGGCCGagugaCGg -3'
miRNA:   3'- cACUUGUAC-GUCGuCGUCGGCagg--GC- -5'
31818 3' -56.5 NC_006938.1 + 27615 0.66 0.658354
Target:  5'- -cGAACggGCGGguGCguGGCCccgcaGUCCUGg -3'
miRNA:   3'- caCUUGuaCGUCguCG--UCGG-----CAGGGC- -5'
31818 3' -56.5 NC_006938.1 + 34789 0.66 0.636471
Target:  5'- cUGGACAcGgAGUccAGCAGCUGUCCg- -3'
miRNA:   3'- cACUUGUaCgUCG--UCGUCGGCAGGgc -5'
31818 3' -56.5 NC_006938.1 + 25899 0.66 0.625518
Target:  5'- -cGGACGUGCu--GGCAGCCGUUggCCa -3'
miRNA:   3'- caCUUGUACGucgUCGUCGGCAG--GGc -5'
31818 3' -56.5 NC_006938.1 + 10415 0.66 0.625518
Target:  5'- -aGGugGUGCAGCccuuGGCAccGCCcUCCCa -3'
miRNA:   3'- caCUugUACGUCG----UCGU--CGGcAGGGc -5'
31818 3' -56.5 NC_006938.1 + 41583 0.67 0.603639
Target:  5'- -gGAGCGgcUGC-GCGGCGGCCugggcaaaGUCCCc -3'
miRNA:   3'- caCUUGU--ACGuCGUCGUCGG--------CAGGGc -5'
31818 3' -56.5 NC_006938.1 + 31826 0.68 0.538851
Target:  5'- -cGAGCugcUGgAGCGGgAGCUGUUCCGu -3'
miRNA:   3'- caCUUGu--ACgUCGUCgUCGGCAGGGC- -5'
31818 3' -56.5 NC_006938.1 + 17463 0.68 0.528261
Target:  5'- gGUGGACAUGUcuGGCGGCugccAGCUGgacUCCGg -3'
miRNA:   3'- -CACUUGUACG--UCGUCG----UCGGCa--GGGC- -5'
31818 3' -56.5 NC_006938.1 + 63355 0.68 0.517748
Target:  5'- -cGAAgG-GCGGCGGCgAGCCGgucgCCCa -3'
miRNA:   3'- caCUUgUaCGUCGUCG-UCGGCa---GGGc -5'
31818 3' -56.5 NC_006938.1 + 26925 0.69 0.496982
Target:  5'- aGUGGACcgGC-GCGGCccgugacugGGCCuGUCCCu -3'
miRNA:   3'- -CACUUGuaCGuCGUCG---------UCGG-CAGGGc -5'
31818 3' -56.5 NC_006938.1 + 7725 0.7 0.408806
Target:  5'- cUGAACGggcUGCAGCAGCAGCUuguugacaugGUUCgCGa -3'
miRNA:   3'- cACUUGU---ACGUCGUCGUCGG----------CAGG-GC- -5'
31818 3' -56.5 NC_006938.1 + 39634 0.72 0.339137
Target:  5'- -aGAcCGUGCgAGCGGUGGCCGUgCCa -3'
miRNA:   3'- caCUuGUACG-UCGUCGUCGGCAgGGc -5'
31818 3' -56.5 NC_006938.1 + 16220 0.74 0.245175
Target:  5'- -gGAGgGUGUGGCAGCGGUCGaCCCa -3'
miRNA:   3'- caCUUgUACGUCGUCGUCGGCaGGGc -5'
31818 3' -56.5 NC_006938.1 + 43168 0.8 0.097158
Target:  5'- aGUGAACGUcCAGCuGUAGCuCGUCCCGg -3'
miRNA:   3'- -CACUUGUAcGUCGuCGUCG-GCAGGGC- -5'
31818 3' -56.5 NC_006938.1 + 18449 1.08 0.000898
Target:  5'- cGUGAACAUGCAGCAGCAGCCGUCCCGc -3'
miRNA:   3'- -CACUUGUACGUCGUCGUCGGCAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.