miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31819 3' -65.9 NC_006938.1 + 50254 0.66 0.283943
Target:  5'- gGUCCGGCGgGUCC-----GGCGCAGc -3'
miRNA:   3'- aCGGGCCGCgCAGGcuccgCCGCGUC- -5'
31819 3' -65.9 NC_006938.1 + 50132 0.66 0.283282
Target:  5'- cGCCgGGCacaaaggccucucGCGuUCCaGAGGCGGgGCc- -3'
miRNA:   3'- aCGGgCCG-------------CGC-AGG-CUCCGCCgCGuc -5'
31819 3' -65.9 NC_006938.1 + 55400 0.66 0.258453
Target:  5'- aGCaguCGGCGCGcucgCCGcAGGCGGCcUGGg -3'
miRNA:   3'- aCGg--GCCGCGCa---GGC-UCCGCCGcGUC- -5'
31819 3' -65.9 NC_006938.1 + 38114 0.66 0.258453
Target:  5'- cGCUCGGCgugcucGCGUCCcuugaGGCGCAGg -3'
miRNA:   3'- aCGGGCCG------CGCAGGcuccgCCGCGUC- -5'
31819 3' -65.9 NC_006938.1 + 47629 0.67 0.246425
Target:  5'- cGCUCGGCa---CCgGAGGUGGUGCAGc -3'
miRNA:   3'- aCGGGCCGcgcaGG-CUCCGCCGCGUC- -5'
31819 3' -65.9 NC_006938.1 + 48107 0.67 0.21838
Target:  5'- cGCCCGaggucuugucgaGCGUGaugCCgGAGGCGGCGaGGg -3'
miRNA:   3'- aCGGGC------------CGCGCa--GG-CUCCGCCGCgUC- -5'
31819 3' -65.9 NC_006938.1 + 1887 0.68 0.193109
Target:  5'- aGCCCGGacagGgGUCgCGcGGCGGUcgGCAGg -3'
miRNA:   3'- aCGGGCCg---CgCAG-GCuCCGCCG--CGUC- -5'
31819 3' -65.9 NC_006938.1 + 36090 0.68 0.183738
Target:  5'- gGCCUGGUugGCGaugCCGuugauGGCGGUGCGa -3'
miRNA:   3'- aCGGGCCG--CGCa--GGCu----CCGCCGCGUc -5'
31819 3' -65.9 NC_006938.1 + 51527 0.72 0.108212
Target:  5'- cUGCCCGGCGCGUucaucgagaucgcaaCCGccGCcaucgagGGCGCGGu -3'
miRNA:   3'- -ACGGGCCGCGCA---------------GGCucCG-------CCGCGUC- -5'
31819 3' -65.9 NC_006938.1 + 50751 0.72 0.107368
Target:  5'- gGCCUGGCGU--CCGGGGCacuGCGCGGc -3'
miRNA:   3'- aCGGGCCGCGcaGGCUCCGc--CGCGUC- -5'
31819 3' -65.9 NC_006938.1 + 18600 1.08 0.000153
Target:  5'- aUGCCCGGCGCGUCCGAGGCGGCGCAGa -3'
miRNA:   3'- -ACGGGCCGCGCAGGCUCCGCCGCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.