miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31819 5' -57.2 NC_006938.1 + 33521 0.66 0.689819
Target:  5'- --aGACUCGGACGCuGAaGACCACg- -3'
miRNA:   3'- cugCUGGGCCUGUGcCUgUUGGUGgu -5'
31819 5' -57.2 NC_006938.1 + 44974 0.66 0.689819
Target:  5'- gGACGugacuguCCCGGuCGCGGG-AGCCguGCCAa -3'
miRNA:   3'- -CUGCu------GGGCCuGUGCCUgUUGG--UGGU- -5'
31819 5' -57.2 NC_006938.1 + 27113 0.66 0.689819
Target:  5'- -uUGACgCGGACGCGGcGCucCCACUc -3'
miRNA:   3'- cuGCUGgGCCUGUGCC-UGuuGGUGGu -5'
31819 5' -57.2 NC_006938.1 + 37602 0.66 0.689819
Target:  5'- aGACGGCCCcgcuggagcGACAgGuGGCAGCCcucACCAa -3'
miRNA:   3'- -CUGCUGGGc--------CUGUgC-CUGUUGG---UGGU- -5'
31819 5' -57.2 NC_006938.1 + 17568 0.66 0.688763
Target:  5'- cGACaACCUGGACGCGGcccagguGCu-CCGCUAc -3'
miRNA:   3'- -CUGcUGGGCCUGUGCC-------UGuuGGUGGU- -5'
31819 5' -57.2 NC_006938.1 + 3519 0.66 0.67924
Target:  5'- cGCGGCCUGGuacCACGG-CGGCaagGCCGg -3'
miRNA:   3'- cUGCUGGGCCu--GUGCCuGUUGg--UGGU- -5'
31819 5' -57.2 NC_006938.1 + 50926 0.66 0.67924
Target:  5'- cGAgGGCCUGGAC-CGaGACuucGCCACg- -3'
miRNA:   3'- -CUgCUGGGCCUGuGC-CUGu--UGGUGgu -5'
31819 5' -57.2 NC_006938.1 + 16270 0.66 0.66862
Target:  5'- cGACGugCCGGagcGCugGGucggcgACAGCC-CCu -3'
miRNA:   3'- -CUGCugGGCC---UGugCC------UGUUGGuGGu -5'
31819 5' -57.2 NC_006938.1 + 15492 0.66 0.66862
Target:  5'- aGGCGA--CGGAgACGGugGACUGCCc -3'
miRNA:   3'- -CUGCUggGCCUgUGCCugUUGGUGGu -5'
31819 5' -57.2 NC_006938.1 + 63365 0.66 0.66862
Target:  5'- cGGCGAgCCGGucgcccACGCGGugGACCu--- -3'
miRNA:   3'- -CUGCUgGGCC------UGUGCCugUUGGuggu -5'
31819 5' -57.2 NC_006938.1 + 33666 0.66 0.657966
Target:  5'- -uUGAgCCGGugGCGGcACGGuuGCCGa -3'
miRNA:   3'- cuGCUgGGCCugUGCC-UGUUggUGGU- -5'
31819 5' -57.2 NC_006938.1 + 8035 0.66 0.647291
Target:  5'- cACGGaggccaagCCGGACaugaugcugACGGACAuccACCGCCAg -3'
miRNA:   3'- cUGCUg-------GGCCUG---------UGCCUGU---UGGUGGU- -5'
31819 5' -57.2 NC_006938.1 + 23258 0.66 0.647291
Target:  5'- cGGCGACCgaggCGGACGuccaGGACGACaucCCAu -3'
miRNA:   3'- -CUGCUGG----GCCUGUg---CCUGUUGgu-GGU- -5'
31819 5' -57.2 NC_006938.1 + 3872 0.66 0.636602
Target:  5'- cGCGugCCGGGCGauGcCAcccuuGCCACCGc -3'
miRNA:   3'- cUGCugGGCCUGUgcCuGU-----UGGUGGU- -5'
31819 5' -57.2 NC_006938.1 + 53390 0.66 0.636602
Target:  5'- gGACGuCCUGGGCuuccUGGACAGCagugcccuCACCGa -3'
miRNA:   3'- -CUGCuGGGCCUGu---GCCUGUUG--------GUGGU- -5'
31819 5' -57.2 NC_006938.1 + 55504 0.67 0.625909
Target:  5'- aGACGACCaCGGAggggcCACGccucGGCGACCucuCCGu -3'
miRNA:   3'- -CUGCUGG-GCCU-----GUGC----CUGUUGGu--GGU- -5'
31819 5' -57.2 NC_006938.1 + 48544 0.67 0.625909
Target:  5'- aGACuGCgUGGGC-CGGACcuCCGCCAu -3'
miRNA:   3'- -CUGcUGgGCCUGuGCCUGuuGGUGGU- -5'
31819 5' -57.2 NC_006938.1 + 62249 0.67 0.615222
Target:  5'- cGCGACCaaGGACGCGaACA-UCACCAg -3'
miRNA:   3'- cUGCUGGg-CCUGUGCcUGUuGGUGGU- -5'
31819 5' -57.2 NC_006938.1 + 25435 0.67 0.604548
Target:  5'- cGACGAgCCGGuGCACGuGgAGCUGCCGu -3'
miRNA:   3'- -CUGCUgGGCC-UGUGCcUgUUGGUGGU- -5'
31819 5' -57.2 NC_006938.1 + 8381 0.67 0.604548
Target:  5'- aGACGAgCCGGuCGC---CGACCACCGg -3'
miRNA:   3'- -CUGCUgGGCCuGUGccuGUUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.