miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31820 3' -50.4 NC_006938.1 + 26026 0.66 0.943457
Target:  5'- -aUGaAGACAgcacugcCCAgGCCAGGGuggaUCCCg -3'
miRNA:   3'- aaAC-UCUGUaa-----GGUaCGGUUCC----AGGG- -5'
31820 3' -50.4 NC_006938.1 + 8650 0.66 0.93826
Target:  5'- --cGAGcgGCucucgUCCAUGaCCAugacguGGUCCCa -3'
miRNA:   3'- aaaCUC--UGua---AGGUAC-GGUu-----CCAGGG- -5'
31820 3' -50.4 NC_006938.1 + 40960 0.66 0.932767
Target:  5'- --aGAGACAgggCCGUGacaacguccuCCGAGGUCg- -3'
miRNA:   3'- aaaCUCUGUaa-GGUAC----------GGUUCCAGgg -5'
31820 3' -50.4 NC_006938.1 + 21805 0.66 0.926976
Target:  5'- -cUGAGGCAccuccCCGUGCU--GGUCCa -3'
miRNA:   3'- aaACUCUGUaa---GGUACGGuuCCAGGg -5'
31820 3' -50.4 NC_006938.1 + 28445 0.67 0.914498
Target:  5'- --aGGGACAgcugUCCA-GCCAucaccuuGGcCCCg -3'
miRNA:   3'- aaaCUCUGUa---AGGUaCGGUu------CCaGGG- -5'
31820 3' -50.4 NC_006938.1 + 37338 0.67 0.901547
Target:  5'- --aGAGGCAUUUCuuucuccuugaucucUGCCAugcaGGGUUCCg -3'
miRNA:   3'- aaaCUCUGUAAGGu--------------ACGGU----UCCAGGG- -5'
31820 3' -50.4 NC_006938.1 + 19956 0.67 0.901547
Target:  5'- --gGAGACGacgacggcucccaccUUCGUGCUggGGUCCUu -3'
miRNA:   3'- aaaCUCUGUa--------------AGGUACGGuuCCAGGG- -5'
31820 3' -50.4 NC_006938.1 + 28734 0.67 0.891331
Target:  5'- -aUGGGGCucgagugcaccuuugUCCAUcCCGAGGUgCCCg -3'
miRNA:   3'- aaACUCUGua-------------AGGUAcGGUUCCA-GGG- -5'
31820 3' -50.4 NC_006938.1 + 50227 0.68 0.853064
Target:  5'- cUUUGucGACAccgccaUCCAgGCCGGGGUCCg -3'
miRNA:   3'- -AAACu-CUGUa-----AGGUaCGGUUCCAGGg -5'
31820 3' -50.4 NC_006938.1 + 23547 0.68 0.844181
Target:  5'- --aGaAGGCAUUCCGcaCCGAGGUCUa -3'
miRNA:   3'- aaaC-UCUGUAAGGUacGGUUCCAGGg -5'
31820 3' -50.4 NC_006938.1 + 35147 0.69 0.825704
Target:  5'- --aGGGuuGga-CAUGCCGAGGUCCa -3'
miRNA:   3'- aaaCUCugUaagGUACGGUUCCAGGg -5'
31820 3' -50.4 NC_006938.1 + 24193 0.69 0.825704
Target:  5'- --aGAGGaucucgUCCGaGCgGAGGUCCCu -3'
miRNA:   3'- aaaCUCUgua---AGGUaCGgUUCCAGGG- -5'
31820 3' -50.4 NC_006938.1 + 62464 0.69 0.825704
Target:  5'- --cGAGACugcgcgucgUCCAccugaGCCGAGGcCCCg -3'
miRNA:   3'- aaaCUCUGua-------AGGUa----CGGUUCCaGGG- -5'
31820 3' -50.4 NC_006938.1 + 61453 0.69 0.825704
Target:  5'- --cGAGGaagaccUCCAUGUCGAGG-CCCu -3'
miRNA:   3'- aaaCUCUgua---AGGUACGGUUCCaGGG- -5'
31820 3' -50.4 NC_006938.1 + 35668 0.69 0.825704
Target:  5'- --gGAGAUgcugUCCGUcGCCAGGGaggagCCCa -3'
miRNA:   3'- aaaCUCUGua--AGGUA-CGGUUCCa----GGG- -5'
31820 3' -50.4 NC_006938.1 + 42054 0.69 0.806349
Target:  5'- -aUGAuGCGcUCCGUGCCGaacgagccGGGUCCa -3'
miRNA:   3'- aaACUcUGUaAGGUACGGU--------UCCAGGg -5'
31820 3' -50.4 NC_006938.1 + 30256 0.71 0.688465
Target:  5'- --aGAGcCGgaCCAUGCCGA-GUCCCa -3'
miRNA:   3'- aaaCUCuGUaaGGUACGGUUcCAGGG- -5'
31820 3' -50.4 NC_006938.1 + 39120 0.71 0.688465
Target:  5'- ----uGGCAUcggCUccGCCAAGGUCCCg -3'
miRNA:   3'- aaacuCUGUAa--GGuaCGGUUCCAGGG- -5'
31820 3' -50.4 NC_006938.1 + 22725 0.72 0.654375
Target:  5'- aUUGGGugG-UCCcgGCC--GGUCCCg -3'
miRNA:   3'- aAACUCugUaAGGuaCGGuuCCAGGG- -5'
31820 3' -50.4 NC_006938.1 + 60765 0.72 0.654375
Target:  5'- --gGAGACGa-CCAgUGgCGAGGUCCCg -3'
miRNA:   3'- aaaCUCUGUaaGGU-ACgGUUCCAGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.