miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31820 5' -57.4 NC_006938.1 + 40596 0.66 0.663557
Target:  5'- cGAGGACCUCaUGCGcuccccggagcuggcGGACCGGuGgCAg -3'
miRNA:   3'- cCUCUUGGAG-ACGUu--------------CCUGGCC-CgGU- -5'
31820 5' -57.4 NC_006938.1 + 42272 0.66 0.659267
Target:  5'- aGGcaAGGACCUC-GCAgaucggacccuuccAGGACCGGucaacgGCCGa -3'
miRNA:   3'- -CC--UCUUGGAGaCGU--------------UCCUGGCC------CGGU- -5'
31820 5' -57.4 NC_006938.1 + 33279 0.66 0.65175
Target:  5'- aGGAGucAGCCgguccgggCUGCAccGugCGGGUCGg -3'
miRNA:   3'- -CCUC--UUGGa-------GACGUucCugGCCCGGU- -5'
31820 5' -57.4 NC_006938.1 + 58462 0.66 0.65175
Target:  5'- cGGAG-ACCUUUGUc--GGCCuGGCCAg -3'
miRNA:   3'- -CCUCuUGGAGACGuucCUGGcCCGGU- -5'
31820 5' -57.4 NC_006938.1 + 21750 0.66 0.65175
Target:  5'- -aAGAugCUCUGCGugcAGGGCCuGGaCCc -3'
miRNA:   3'- ccUCUugGAGACGU---UCCUGGcCC-GGu -5'
31820 5' -57.4 NC_006938.1 + 3275 0.66 0.640998
Target:  5'- -uAGAGCC-CaGCAuagcccaagggaGGGAgCGGGCCAa -3'
miRNA:   3'- ccUCUUGGaGaCGU------------UCCUgGCCCGGU- -5'
31820 5' -57.4 NC_006938.1 + 59525 0.66 0.608732
Target:  5'- uGAGAACCgugGCGAagucGGCCGGGuCCGg -3'
miRNA:   3'- cCUCUUGGagaCGUUc---CUGGCCC-GGU- -5'
31820 5' -57.4 NC_006938.1 + 12213 0.67 0.586236
Target:  5'- -uGGAACCUgaGCAAGGGCUucauugaacucgaGGaGCCGa -3'
miRNA:   3'- ccUCUUGGAgaCGUUCCUGG-------------CC-CGGU- -5'
31820 5' -57.4 NC_006938.1 + 62635 0.67 0.566018
Target:  5'- cGGAGGACgUCaGCAuu-ACCGGGaCCAc -3'
miRNA:   3'- -CCUCUUGgAGaCGUuccUGGCCC-GGU- -5'
31820 5' -57.4 NC_006938.1 + 34232 0.67 0.548084
Target:  5'- aGGAGAAguaccgcgugcucauCCUCgGCGAGGcggaggucaacgaGCCgcaGGGCCAg -3'
miRNA:   3'- -CCUCUU---------------GGAGaCGUUCC-------------UGG---CCCGGU- -5'
31820 5' -57.4 NC_006938.1 + 7733 0.68 0.524116
Target:  5'- cGGGcAGCCcuUCUcGCuGAGGACCuGGGCCGc -3'
miRNA:   3'- -CCUcUUGG--AGA-CG-UUCCUGG-CCCGGU- -5'
31820 5' -57.4 NC_006938.1 + 28499 0.68 0.524116
Target:  5'- aGGAGcuCCUCcgugGCAAGcGCCGcucGGCCAa -3'
miRNA:   3'- -CCUCuuGGAGa---CGUUCcUGGC---CCGGU- -5'
31820 5' -57.4 NC_006938.1 + 21454 0.68 0.503607
Target:  5'- uGGAGAcggACCUCgGCGGGGACCacuGCUu -3'
miRNA:   3'- -CCUCU---UGGAGaCGUUCCUGGcc-CGGu -5'
31820 5' -57.4 NC_006938.1 + 51983 0.68 0.483453
Target:  5'- uGGAGGACCUC-GCAGaGACCGuGGaCGa -3'
miRNA:   3'- -CCUCUUGGAGaCGUUcCUGGC-CCgGU- -5'
31820 5' -57.4 NC_006938.1 + 29134 0.69 0.473522
Target:  5'- cGAGGACaucgaUCUGCAcaagaGGGGCCucGGCCGa -3'
miRNA:   3'- cCUCUUGg----AGACGU-----UCCUGGc-CCGGU- -5'
31820 5' -57.4 NC_006938.1 + 39196 0.69 0.473522
Target:  5'- cGGAGccgauGCCaagCUGCAuGGcACCGgGGCCGa -3'
miRNA:   3'- -CCUCu----UGGa--GACGUuCC-UGGC-CCGGU- -5'
31820 5' -57.4 NC_006938.1 + 32236 0.69 0.463695
Target:  5'- uGAGGACCauggUCUGCGA--GCCGGGCa- -3'
miRNA:   3'- cCUCUUGG----AGACGUUccUGGCCCGgu -5'
31820 5' -57.4 NC_006938.1 + 8792 0.69 0.463695
Target:  5'- gGGAGAGCUUCaGagaGGGGAU-GGGCCGu -3'
miRNA:   3'- -CCUCUUGGAGaCg--UUCCUGgCCCGGU- -5'
31820 5' -57.4 NC_006938.1 + 3889 0.69 0.444368
Target:  5'- -cAGGAgUUCUGgAAGGACCGGGgCu -3'
miRNA:   3'- ccUCUUgGAGACgUUCCUGGCCCgGu -5'
31820 5' -57.4 NC_006938.1 + 61516 0.7 0.416248
Target:  5'- --cGAugCUCcgUGuCGAGGGCCGGuGCCAc -3'
miRNA:   3'- ccuCUugGAG--AC-GUUCCUGGCC-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.