miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31821 3' -54.8 NC_006938.1 + 2066 0.66 0.771366
Target:  5'- aGGGGCCGguucuacGACUGCgC-CGAGCagGUg -3'
miRNA:   3'- aCCCUGGCa------CUGAUG-GaGUUCGagCG- -5'
31821 3' -54.8 NC_006938.1 + 5121 0.67 0.730288
Target:  5'- cUGGuGACCGUGccACUGCaa-GAGCUUGa -3'
miRNA:   3'- -ACC-CUGGCAC--UGAUGgagUUCGAGCg -5'
31821 3' -54.8 NC_006938.1 + 11428 0.71 0.474089
Target:  5'- cGGGAacaGUGGagcCCUCGGGCUCGUc -3'
miRNA:   3'- aCCCUgg-CACUgauGGAGUUCGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 17104 0.7 0.546639
Target:  5'- -uGGAUCGagGACUccGCCUCGagcAGCUUGCg -3'
miRNA:   3'- acCCUGGCa-CUGA--UGGAGU---UCGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 17542 0.66 0.791102
Target:  5'- aGGGACC-UGugUcCUUCAAGUggggaUCGUa -3'
miRNA:   3'- aCCCUGGcACugAuGGAGUUCG-----AGCG- -5'
31821 3' -54.8 NC_006938.1 + 18538 0.66 0.791102
Target:  5'- cGGGACgGcuGCUGCUgcauguUCAcguGCUCGCa -3'
miRNA:   3'- aCCCUGgCacUGAUGG------AGUu--CGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 19547 0.67 0.709124
Target:  5'- gGGGACUGcGugUGCCUCGcGgaCGg -3'
miRNA:   3'- aCCCUGGCaCugAUGGAGUuCgaGCg -5'
31821 3' -54.8 NC_006938.1 + 19804 1.11 0.000993
Target:  5'- gUGGGACCGUGACUACCUCAAGCUCGCc -3'
miRNA:   3'- -ACCCUGGCACUGAUGGAGUUCGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 19928 0.66 0.80073
Target:  5'- cUGGGGuCCuUGG--ACUUCAGGUUCGCc -3'
miRNA:   3'- -ACCCU-GGcACUgaUGGAGUUCGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 20940 0.67 0.730288
Target:  5'- cUGGGAgCaGUGACccUAUCUgGucGCUCGCa -3'
miRNA:   3'- -ACCCUgG-CACUG--AUGGAgUu-CGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 29150 0.69 0.611441
Target:  5'- gGuGGAgaGUcucGGCUAUCUCAAGCUCGa -3'
miRNA:   3'- aC-CCUggCA---CUGAUGGAGUUCGAGCg -5'
31821 3' -54.8 NC_006938.1 + 30010 0.67 0.730288
Target:  5'- aGGuGGCCGUGGCaGCUcaugagcCAGGcCUCGCc -3'
miRNA:   3'- aCC-CUGGCACUGaUGGa------GUUC-GAGCG- -5'
31821 3' -54.8 NC_006938.1 + 34455 0.67 0.698425
Target:  5'- cGGGAUcaucugcagCGUGG-UGCCUCGguGGCUCGg -3'
miRNA:   3'- aCCCUG---------GCACUgAUGGAGU--UCGAGCg -5'
31821 3' -54.8 NC_006938.1 + 37620 0.66 0.775361
Target:  5'- aUGGcGGCCucguccagcuugccaGcGGCggcgGCCUCGAGCUCGg -3'
miRNA:   3'- -ACC-CUGG---------------CaCUGa---UGGAGUUCGAGCg -5'
31821 3' -54.8 NC_006938.1 + 39207 0.68 0.687662
Target:  5'- cGGGACCuUGGCggaGCCgaugcCAAGCU-GCa -3'
miRNA:   3'- aCCCUGGcACUGa--UGGa----GUUCGAgCG- -5'
31821 3' -54.8 NC_006938.1 + 39315 0.66 0.794973
Target:  5'- cUGGaACCGgGuCUACCcggagcggaagcagaUCAAGUUCGCa -3'
miRNA:   3'- -ACCcUGGCaCuGAUGG---------------AGUUCGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 40954 0.69 0.578845
Target:  5'- -aGGGCCGUGACaacguCCUCcGAGgUCGUg -3'
miRNA:   3'- acCCUGGCACUGau---GGAG-UUCgAGCG- -5'
31821 3' -54.8 NC_006938.1 + 41441 0.68 0.66599
Target:  5'- cUGGGACUccacgGGCU-CCUUcAGCUCGUu -3'
miRNA:   3'- -ACCCUGGca---CUGAuGGAGuUCGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 44591 0.7 0.545574
Target:  5'- cGGGACUGUcGCUggGCCUCAcaugAGCuuccuugUCGCa -3'
miRNA:   3'- aCCCUGGCAcUGA--UGGAGU----UCG-------AGCG- -5'
31821 3' -54.8 NC_006938.1 + 46655 0.72 0.454241
Target:  5'- cGGGGCCGUGuc-GCCUCuccaGGGCUuCGUg -3'
miRNA:   3'- aCCCUGGCACugaUGGAG----UUCGA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.