miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31822 3' -56.8 NC_006938.1 + 41327 0.66 0.695921
Target:  5'- cAGCUCCGUCucuGUCAccaucaaUCCUGUggCGGg -3'
miRNA:   3'- -UCGAGGCAGuu-CGGUc------GGGACAa-GCC- -5'
31822 3' -56.8 NC_006938.1 + 49400 0.66 0.695921
Target:  5'- cAGCUCCacGUCcugcucgaacGAGCCGgucaugcuGCCCUGgucCGGg -3'
miRNA:   3'- -UCGAGG--CAG----------UUCGGU--------CGGGACaa-GCC- -5'
31822 3' -56.8 NC_006938.1 + 53804 0.66 0.685267
Target:  5'- aAGCUCCGUUgGAGCCAcuggcaCCCUGggCa- -3'
miRNA:   3'- -UCGAGGCAG-UUCGGUc-----GGGACaaGcc -5'
31822 3' -56.8 NC_006938.1 + 50592 0.66 0.685267
Target:  5'- -uCUCCGUCcccguagugacGAGCCGGagCCUGUUCu- -3'
miRNA:   3'- ucGAGGCAG-----------UUCGGUCg-GGACAAGcc -5'
31822 3' -56.8 NC_006938.1 + 14298 0.66 0.684199
Target:  5'- gAGCgccUCGcCAAGCUgcaucccGGCUUUGUUCGGg -3'
miRNA:   3'- -UCGa--GGCaGUUCGG-------UCGGGACAAGCC- -5'
31822 3' -56.8 NC_006938.1 + 40334 0.66 0.653053
Target:  5'- --gUCCGUCGAGUuuGCCagggcGUUCGGg -3'
miRNA:   3'- ucgAGGCAGUUCGguCGGga---CAAGCC- -5'
31822 3' -56.8 NC_006938.1 + 16489 0.67 0.631467
Target:  5'- cAGCa-CGUCGAGCUcgaucGGCUCgagGUUCGGc -3'
miRNA:   3'- -UCGagGCAGUUCGG-----UCGGGa--CAAGCC- -5'
31822 3' -56.8 NC_006938.1 + 62436 0.67 0.631467
Target:  5'- aGGCcCCGUUGAaggugaccGUC-GCCCUGUUUGGg -3'
miRNA:   3'- -UCGaGGCAGUU--------CGGuCGGGACAAGCC- -5'
31822 3' -56.8 NC_006938.1 + 12746 0.69 0.494172
Target:  5'- aGGaCUCCGUCGAGCUuguucauGCC--GUUCGGu -3'
miRNA:   3'- -UC-GAGGCAGUUCGGu------CGGgaCAAGCC- -5'
31822 3' -56.8 NC_006938.1 + 36490 0.7 0.444853
Target:  5'- uGCUCUGccUCGucAGCCAGUCCUGguaGGa -3'
miRNA:   3'- uCGAGGC--AGU--UCGGUCGGGACaagCC- -5'
31822 3' -56.8 NC_006938.1 + 41821 0.72 0.330114
Target:  5'- aGGcCUCUGUCGGGCCgacggucaacaccGGCUCUG-UCGGg -3'
miRNA:   3'- -UC-GAGGCAGUUCGG-------------UCGGGACaAGCC- -5'
31822 3' -56.8 NC_006938.1 + 15209 0.73 0.293176
Target:  5'- cGUUCCGggucucgCGAGUCAGCCCUGacuccCGGa -3'
miRNA:   3'- uCGAGGCa------GUUCGGUCGGGACaa---GCC- -5'
31822 3' -56.8 NC_006938.1 + 9871 0.74 0.246123
Target:  5'- aGGcCUCCGUCGAGCUGGCCCaGgagaaGGg -3'
miRNA:   3'- -UC-GAGGCAGUUCGGUCGGGaCaag--CC- -5'
31822 3' -56.8 NC_006938.1 + 20243 1.09 0.000797
Target:  5'- cAGCUCCGUCAAGCCAGCCCUGUUCGGc -3'
miRNA:   3'- -UCGAGGCAGUUCGGUCGGGACAAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.