miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31823 3' -51.6 NC_006938.1 + 18169 0.66 0.928336
Target:  5'- aGGGCAuccuGGUGGACgcccuccgCGCGgCCGGa- -3'
miRNA:   3'- -CCUGUu---CCACUUGaa------GCGCgGGUUcu -5'
31823 3' -51.6 NC_006938.1 + 49907 0.66 0.922467
Target:  5'- aGGGuCGAGGUGAACg--Ga-CCCGAGAu -3'
miRNA:   3'- -CCU-GUUCCACUUGaagCgcGGGUUCU- -5'
31823 3' -51.6 NC_006938.1 + 30616 0.66 0.916315
Target:  5'- cGAgGAGGUcgucggGAGCacgaaCGCGCCCGAGc -3'
miRNA:   3'- cCUgUUCCA------CUUGaa---GCGCGGGUUCu -5'
31823 3' -51.6 NC_006938.1 + 15486 0.66 0.909881
Target:  5'- cGGAgAcGGUGGACU----GCCCAGGAg -3'
miRNA:   3'- -CCUgUuCCACUUGAagcgCGGGUUCU- -5'
31823 3' -51.6 NC_006938.1 + 48351 0.66 0.909881
Target:  5'- cGGGCGGcGGUG-ACgagCGCGUCCugucGGAg -3'
miRNA:   3'- -CCUGUU-CCACuUGaa-GCGCGGGu---UCU- -5'
31823 3' -51.6 NC_006938.1 + 13791 0.67 0.896174
Target:  5'- aGACGAGGUaGGugUguugaauccgcUCGCGCUgGGGGa -3'
miRNA:   3'- cCUGUUCCA-CUugA-----------AGCGCGGgUUCU- -5'
31823 3' -51.6 NC_006938.1 + 38935 0.67 0.881375
Target:  5'- --cCAuGGUGAGCUUCGUG-UCGAGAu -3'
miRNA:   3'- ccuGUuCCACUUGAAGCGCgGGUUCU- -5'
31823 3' -51.6 NC_006938.1 + 23484 0.67 0.873578
Target:  5'- cGGACcGGGcagagGAGCUgcagaaggCG-GCCCAGGAg -3'
miRNA:   3'- -CCUGuUCCa----CUUGAa-------GCgCGGGUUCU- -5'
31823 3' -51.6 NC_006938.1 + 22638 0.68 0.816052
Target:  5'- uGGACcagcaccuugucgcgGAGGUGGGCgUUGaaguuGCCCAGGAa -3'
miRNA:   3'- -CCUG---------------UUCCACUUGaAGCg----CGGGUUCU- -5'
31823 3' -51.6 NC_006938.1 + 7683 0.68 0.812259
Target:  5'- -cACAAGcUGAuCUaCGUGCCCAAGAg -3'
miRNA:   3'- ccUGUUCcACUuGAaGCGCGGGUUCU- -5'
31823 3' -51.6 NC_006938.1 + 34701 0.69 0.792845
Target:  5'- cGGACAGcuGcUGGACUcCGUGUCCAGGGa -3'
miRNA:   3'- -CCUGUU--CcACUUGAaGCGCGGGUUCU- -5'
31823 3' -51.6 NC_006938.1 + 52971 0.69 0.762463
Target:  5'- aGGAUccGGUcGAACgaggUCGaGCCCGAGGu -3'
miRNA:   3'- -CCUGuuCCA-CUUGa---AGCgCGGGUUCU- -5'
31823 3' -51.6 NC_006938.1 + 46055 0.7 0.752045
Target:  5'- cGGACAcccAGGUGAAUcUgGUGgCCCAGGc -3'
miRNA:   3'- -CCUGU---UCCACUUGaAgCGC-GGGUUCu -5'
31823 3' -51.6 NC_006938.1 + 61643 0.71 0.698314
Target:  5'- uGGACGAGaGUG-ACUU--UGCCCGAGAu -3'
miRNA:   3'- -CCUGUUC-CACuUGAAgcGCGGGUUCU- -5'
31823 3' -51.6 NC_006938.1 + 14032 0.75 0.459408
Target:  5'- cGGGCcgcGAGGgGAACaaUCGCGUCCGAGAg -3'
miRNA:   3'- -CCUG---UUCCaCUUGa-AGCGCGGGUUCU- -5'
31823 3' -51.6 NC_006938.1 + 62347 0.76 0.38284
Target:  5'- aGGGCAAcgcuGGUGAugUUCGCGUCCuuGGu -3'
miRNA:   3'- -CCUGUU----CCACUugAAGCGCGGGuuCU- -5'
31823 3' -51.6 NC_006938.1 + 20759 1.12 0.001715
Target:  5'- cGGACAAGGUGAACUUCGCGCCCAAGAg -3'
miRNA:   3'- -CCUGUUCCACUUGAAGCGCGGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.