miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31824 3' -45.7 NC_006938.1 + 20998 1.11 0.009014
Target:  5'- aCAUCCAGGAAUCGAUUGACUUUCUCAa -3'
miRNA:   3'- -GUAGGUCCUUAGCUAACUGAAAGAGU- -5'
31824 3' -45.7 NC_006938.1 + 55361 0.66 0.997966
Target:  5'- cUAUCCGGGAGUCGuguagaUGGCaucaCUCGc -3'
miRNA:   3'- -GUAGGUCCUUAGCua----ACUGaaa-GAGU- -5'
31824 3' -45.7 NC_006938.1 + 58670 0.66 0.998647
Target:  5'- uGUCCAGG---CGGU-GACUggUCUCAc -3'
miRNA:   3'- gUAGGUCCuuaGCUAaCUGAa-AGAGU- -5'
31824 3' -45.7 NC_006938.1 + 36165 0.7 0.972857
Target:  5'- gGUUCGGGAGUCGAgagUGGCgacguagaUCUCc -3'
miRNA:   3'- gUAGGUCCUUAGCUa--ACUGaa------AGAGu -5'
31824 3' -45.7 NC_006938.1 + 12946 0.7 0.962296
Target:  5'- gGUCCAGGAuuggcccacagGUCGAUgucgucGGCgUUCUCGa -3'
miRNA:   3'- gUAGGUCCU-----------UAGCUAa-----CUGaAAGAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.