miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31824 5' -50.4 NC_006938.1 + 21049 1.13 0.002491
Target:  5'- gGGUGCUCAUGUCAAUCGUCCCGAACGg -3'
miRNA:   3'- -CCACGAGUACAGUUAGCAGGGCUUGC- -5'
31824 5' -50.4 NC_006938.1 + 54329 0.69 0.858575
Target:  5'- aGGUGgUCAcgacgaUGUCAGUuccaaccugCGUCCCGucGACGa -3'
miRNA:   3'- -CCACgAGU------ACAGUUA---------GCAGGGC--UUGC- -5'
31824 5' -50.4 NC_006938.1 + 34095 0.69 0.87484
Target:  5'- cGGUGCcuucggCAUGUCcGUCagcagCCCGAGCc -3'
miRNA:   3'- -CCACGa-----GUACAGuUAGca---GGGCUUGc -5'
31824 5' -50.4 NC_006938.1 + 1462 0.69 0.88259
Target:  5'- aGGUGCUUGuagacUGUCuuggGGUUGaUCCCGAGCu -3'
miRNA:   3'- -CCACGAGU-----ACAG----UUAGC-AGGGCUUGc -5'
31824 5' -50.4 NC_006938.1 + 44066 0.68 0.897293
Target:  5'- aGUGUaCGUGUCAA-CGUCCUGAu-- -3'
miRNA:   3'- cCACGaGUACAGUUaGCAGGGCUugc -5'
31824 5' -50.4 NC_006938.1 + 22702 0.67 0.936885
Target:  5'- cGUGgUCAUGUCcuccaacagcgauugGGUgGUCCCGGcCGg -3'
miRNA:   3'- cCACgAGUACAG---------------UUAgCAGGGCUuGC- -5'
31824 5' -50.4 NC_006938.1 + 11660 0.67 0.944977
Target:  5'- cGGUGCUC-UGUCA----UCCCGcACa -3'
miRNA:   3'- -CCACGAGuACAGUuagcAGGGCuUGc -5'
31824 5' -50.4 NC_006938.1 + 29402 0.66 0.965757
Target:  5'- cGGcGCaUgAUGUCGucucCGUCCCGGugGc -3'
miRNA:   3'- -CCaCG-AgUACAGUua--GCAGGGCUugC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.