miRNA: 3'- gUCA--ACGUCGCGCGagUGcUCACGCG- -5'
miRNA: 3'- gUCAAC-GUCGCGcGAGUGCUCaCGCG- -5'
miRNA: 3'- -GUCA-----ACGUCG-C-GCGAGugCUCA---CGCg -5'
miRNA: 3'- gUCA---ACGuCGCGCGAGuGCUCa-CGCG- -5'
miRNA: 3'- -GUCAACgUCGCGCGAGUGCUCACGCG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31826 | 3' | -56.2 | NC_006938.1 | + | 12677 | 0.66 | 0.691398 |
|
Target: 5'- gAGUccUGUGGUGCGUggAUcAGUGCGCg -3' miRNA: 3'- gUCA--ACGUCGCGCGagUGcUCACGCG- -5' |
|||||||
| 31826 | 3' | -56.2 | NC_006938.1 | + | 22047 | 0.67 | 0.59358 |
|
Target: 5'- gGGUUGaUGGCGCaCUCGUGAGcGCGCu -3' miRNA: 3'- gUCAAC-GUCGCGcGAGUGCUCaCGCG- -5' |
|||||||
| 31826 | 3' | -56.2 | NC_006938.1 | + | 51905 | 0.68 | 0.550529 |
|
Target: 5'- cCAGUggcgcUGCAGCaGaCGCUCugGGGUcagGCGg -3' miRNA: 3'- -GUCA-----ACGUCG-C-GCGAGugCUCA---CGCg -5' |
|||||||
| 31826 | 3' | -56.2 | NC_006938.1 | + | 59671 | 0.69 | 0.518877 |
|
Target: 5'- aGGUgcuUGCcGCGCGCUUcUGAGccGCGCg -3' miRNA: 3'- gUCA---ACGuCGCGCGAGuGCUCa-CGCG- -5' |
|||||||
| 31826 | 3' | -56.2 | NC_006938.1 | + | 21950 | 0.98 | 0.005643 |
|
Target: 5'- gCAGUUG-AGCGCGCUCACGAGUGCGCc -3' miRNA: 3'- -GUCAACgUCGCGCGAGUGCUCACGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home