miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31826 5' -55 NC_006938.1 + 10103 0.65 0.779628
Target:  5'- aCGGUGCacaUGCCGgacgguguUCGCacggagcgGGugGACGACu -3'
miRNA:   3'- -GCCGCG---ACGGU--------AGCGa-------CUugCUGUUG- -5'
31826 5' -55 NC_006938.1 + 25785 0.65 0.779628
Target:  5'- -cGCGCU-CCGUCGUUGAGCuguGGCAu- -3'
miRNA:   3'- gcCGCGAcGGUAGCGACUUG---CUGUug -5'
31826 5' -55 NC_006938.1 + 51264 0.65 0.779628
Target:  5'- gCGGCGauggcaGCCGUCaGCgcgcgGAACG-CGACg -3'
miRNA:   3'- -GCCGCga----CGGUAG-CGa----CUUGCuGUUG- -5'
31826 5' -55 NC_006938.1 + 18555 0.65 0.779628
Target:  5'- gGGCGaUGUCcucGUCGCgGGACGGCuGCu -3'
miRNA:   3'- gCCGCgACGG---UAGCGaCUUGCUGuUG- -5'
31826 5' -55 NC_006938.1 + 20181 0.65 0.779628
Target:  5'- gCGGCGgaUGCCAga-CUGGAUGAuCAGCu -3'
miRNA:   3'- -GCCGCg-ACGGUagcGACUUGCU-GUUG- -5'
31826 5' -55 NC_006938.1 + 18192 0.66 0.769609
Target:  5'- -cGCGCgGCCGgacaccaGCUGAACGcCGAUg -3'
miRNA:   3'- gcCGCGaCGGUag-----CGACUUGCuGUUG- -5'
31826 5' -55 NC_006938.1 + 6598 0.66 0.766575
Target:  5'- aCGGacgcaagaucaaGCUGCCccucugggcgcAUCGCUGGACuguuguguccgagGACGACg -3'
miRNA:   3'- -GCCg-----------CGACGG-----------UAGCGACUUG-------------CUGUUG- -5'
31826 5' -55 NC_006938.1 + 36189 0.66 0.759449
Target:  5'- cCGuGuCGCUGCCAUCGacggGGACGccaucgggucACGACc -3'
miRNA:   3'- -GC-C-GCGACGGUAGCga--CUUGC----------UGUUG- -5'
31826 5' -55 NC_006938.1 + 56852 0.66 0.749159
Target:  5'- --aUGCUGCCAcCGCcugacUGGGCGACGAa -3'
miRNA:   3'- gccGCGACGGUaGCG-----ACUUGCUGUUg -5'
31826 5' -55 NC_006938.1 + 42447 0.66 0.738752
Target:  5'- aGGCGagaUGCCGUCGaucgUGAGugucucggUGACAGCc -3'
miRNA:   3'- gCCGCg--ACGGUAGCg---ACUU--------GCUGUUG- -5'
31826 5' -55 NC_006938.1 + 44509 0.66 0.738752
Target:  5'- gGGUuaGCUGCCG-CGCUGAAUGccccacCGGCc -3'
miRNA:   3'- gCCG--CGACGGUaGCGACUUGCu-----GUUG- -5'
31826 5' -55 NC_006938.1 + 58998 0.66 0.738752
Target:  5'- aGcGCGCUGCCucaauccUCG-UGGcCGACGACg -3'
miRNA:   3'- gC-CGCGACGGu------AGCgACUuGCUGUUG- -5'
31826 5' -55 NC_006938.1 + 42847 0.66 0.728237
Target:  5'- aCGGaCGCUGCCcUCGgUGGugG-CAu- -3'
miRNA:   3'- -GCC-GCGACGGuAGCgACUugCuGUug -5'
31826 5' -55 NC_006938.1 + 22753 0.66 0.728237
Target:  5'- cCGGCGCU-UCAUggUGCUGGACGugucggacaaGCGACu -3'
miRNA:   3'- -GCCGCGAcGGUA--GCGACUUGC----------UGUUG- -5'
31826 5' -55 NC_006938.1 + 63091 0.66 0.728237
Target:  5'- aCGuGgGCUGUCGcCGCUGGaauACGGCAGu -3'
miRNA:   3'- -GC-CgCGACGGUaGCGACU---UGCUGUUg -5'
31826 5' -55 NC_006938.1 + 52514 0.67 0.717627
Target:  5'- aGGCGgUGCUcgCcCUGAAC-ACAGCu -3'
miRNA:   3'- gCCGCgACGGuaGcGACUUGcUGUUG- -5'
31826 5' -55 NC_006938.1 + 41119 0.67 0.717627
Target:  5'- gGGCcuCUGCCAUCGC--AACGACc-- -3'
miRNA:   3'- gCCGc-GACGGUAGCGacUUGCUGuug -5'
31826 5' -55 NC_006938.1 + 2352 0.67 0.696165
Target:  5'- uGGUG--GCCG-CGCgaccgGAACGACAGCa -3'
miRNA:   3'- gCCGCgaCGGUaGCGa----CUUGCUGUUG- -5'
31826 5' -55 NC_006938.1 + 63269 0.67 0.674458
Target:  5'- gGGUGUU-CgGUCGCUGGcACGACAGa -3'
miRNA:   3'- gCCGCGAcGgUAGCGACU-UGCUGUUg -5'
31826 5' -55 NC_006938.1 + 16265 0.68 0.65259
Target:  5'- uGGCaCgacgUGCCGgagCGCUGGGuCGGCGACa -3'
miRNA:   3'- gCCGcG----ACGGUa--GCGACUU-GCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.