miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31826 5' -55 NC_006938.1 + 2352 0.67 0.696165
Target:  5'- uGGUG--GCCG-CGCgaccgGAACGACAGCa -3'
miRNA:   3'- gCCGCgaCGGUaGCGa----CUUGCUGUUG- -5'
31826 5' -55 NC_006938.1 + 6598 0.66 0.766575
Target:  5'- aCGGacgcaagaucaaGCUGCCccucugggcgcAUCGCUGGACuguuguguccgagGACGACg -3'
miRNA:   3'- -GCCg-----------CGACGG-----------UAGCGACUUG-------------CUGUUG- -5'
31826 5' -55 NC_006938.1 + 10103 0.65 0.779628
Target:  5'- aCGGUGCacaUGCCGgacgguguUCGCacggagcgGGugGACGACu -3'
miRNA:   3'- -GCCGCG---ACGGU--------AGCGa-------CUugCUGUUG- -5'
31826 5' -55 NC_006938.1 + 16265 0.68 0.65259
Target:  5'- uGGCaCgacgUGCCGgagCGCUGGGuCGGCGACa -3'
miRNA:   3'- gCCGcG----ACGGUa--GCGACUU-GCUGUUG- -5'
31826 5' -55 NC_006938.1 + 17451 0.69 0.569471
Target:  5'- uGGCgGCUGCCA--GCUGGACuccggugcgaacauuGGCAGCu -3'
miRNA:   3'- gCCG-CGACGGUagCGACUUG---------------CUGUUG- -5'
31826 5' -55 NC_006938.1 + 18007 0.71 0.480015
Target:  5'- aGGUGCUuCCggUGCUGGugaggauGCGACAGCg -3'
miRNA:   3'- gCCGCGAcGGuaGCGACU-------UGCUGUUG- -5'
31826 5' -55 NC_006938.1 + 18192 0.66 0.769609
Target:  5'- -cGCGCgGCCGgacaccaGCUGAACGcCGAUg -3'
miRNA:   3'- gcCGCGaCGGUag-----CGACUUGCuGUUG- -5'
31826 5' -55 NC_006938.1 + 18555 0.65 0.779628
Target:  5'- gGGCGaUGUCcucGUCGCgGGACGGCuGCu -3'
miRNA:   3'- gCCGCgACGG---UAGCGaCUUGCUGuUG- -5'
31826 5' -55 NC_006938.1 + 20181 0.65 0.779628
Target:  5'- gCGGCGgaUGCCAga-CUGGAUGAuCAGCu -3'
miRNA:   3'- -GCCGCg-ACGGUagcGACUUGCU-GUUG- -5'
31826 5' -55 NC_006938.1 + 20449 0.74 0.326293
Target:  5'- gCGGaCGCUGCCAggUGCUGAucaaggugaagaACGACAu- -3'
miRNA:   3'- -GCC-GCGACGGUa-GCGACU------------UGCUGUug -5'
31826 5' -55 NC_006938.1 + 21983 1.09 0.001209
Target:  5'- cCGGCGCUGCCAUCGCUGAACGACAACc -3'
miRNA:   3'- -GCCGCGACGGUAGCGACUUGCUGUUG- -5'
31826 5' -55 NC_006938.1 + 22662 0.68 0.641623
Target:  5'- cCGGCGaagaaUGCC-UCGUUG-GCGugGACc -3'
miRNA:   3'- -GCCGCg----ACGGuAGCGACuUGCugUUG- -5'
31826 5' -55 NC_006938.1 + 22753 0.66 0.728237
Target:  5'- cCGGCGCU-UCAUggUGCUGGACGugucggacaaGCGACu -3'
miRNA:   3'- -GCCGCGAcGGUA--GCGACUUGC----------UGUUG- -5'
31826 5' -55 NC_006938.1 + 25785 0.65 0.779628
Target:  5'- -cGCGCU-CCGUCGUUGAGCuguGGCAu- -3'
miRNA:   3'- gcCGCGAcGGUAGCGACUUG---CUGUug -5'
31826 5' -55 NC_006938.1 + 26314 0.77 0.200725
Target:  5'- aGG-GUUGCCAUCGCuacgcccaugUGGGCGGCGACa -3'
miRNA:   3'- gCCgCGACGGUAGCG----------ACUUGCUGUUG- -5'
31826 5' -55 NC_006938.1 + 27245 0.79 0.14497
Target:  5'- uGGCGC-GCCAUCGuCUGAugGACGc- -3'
miRNA:   3'- gCCGCGaCGGUAGC-GACUugCUGUug -5'
31826 5' -55 NC_006938.1 + 29496 0.7 0.533007
Target:  5'- aGGCGCgcagGCCGUCGUgaggagGAACcuGugAACc -3'
miRNA:   3'- gCCGCGa---CGGUAGCGa-----CUUG--CugUUG- -5'
31826 5' -55 NC_006938.1 + 36189 0.66 0.759449
Target:  5'- cCGuGuCGCUGCCAUCGacggGGACGccaucgggucACGACc -3'
miRNA:   3'- -GC-C-GCGACGGUAGCga--CUUGC----------UGUUG- -5'
31826 5' -55 NC_006938.1 + 36199 0.69 0.597767
Target:  5'- -aGCGCUGaCCAUCcaggGAGCGACAAa -3'
miRNA:   3'- gcCGCGAC-GGUAGcga-CUUGCUGUUg -5'
31826 5' -55 NC_006938.1 + 36644 0.71 0.441286
Target:  5'- aGGC-CUGCCG-CGCgGAACGcCGACg -3'
miRNA:   3'- gCCGcGACGGUaGCGaCUUGCuGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.