miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31827 5' -53.5 NC_006938.1 + 45753 0.66 0.858501
Target:  5'- gGGGCaACCGGUucAAGuccgugcgcaaGACACGaUUCGcCGg -3'
miRNA:   3'- -CCCG-UGGCCG--UUC-----------UUGUGC-AAGCaGC- -5'
31827 5' -53.5 NC_006938.1 + 46853 0.68 0.783288
Target:  5'- -uGCGCCaGCGGGAGC-CGUcugacucgaggaucUCGUCGa -3'
miRNA:   3'- ccCGUGGcCGUUCUUGuGCA--------------AGCAGC- -5'
31827 5' -53.5 NC_006938.1 + 48351 0.76 0.350529
Target:  5'- cGGGCGgCGGUGAcGAGCGCGUccUGUCGg -3'
miRNA:   3'- -CCCGUgGCCGUU-CUUGUGCAa-GCAGC- -5'
31827 5' -53.5 NC_006938.1 + 55979 0.69 0.693259
Target:  5'- cGGGCACCuGGCcGGAGCccuCGcUCGccUCGa -3'
miRNA:   3'- -CCCGUGG-CCGuUCUUGu--GCaAGC--AGC- -5'
31827 5' -53.5 NC_006938.1 + 57007 0.75 0.384854
Target:  5'- -aGCAUCGGCGgucagcAGGGCGCGUUUGUCu -3'
miRNA:   3'- ccCGUGGCCGU------UCUUGUGCAAGCAGc -5'
31827 5' -53.5 NC_006938.1 + 58115 0.69 0.725166
Target:  5'- -uGUGCCGGCGAGGGCGCGgcuuaucUCaUCGa -3'
miRNA:   3'- ccCGUGGCCGUUCUUGUGCa------AGcAGC- -5'
31827 5' -53.5 NC_006938.1 + 58462 0.66 0.858501
Target:  5'- uGGGcCAgCGGCAgcaGGAACGCGaagaaGUUGg -3'
miRNA:   3'- -CCC-GUgGCCGU---UCUUGUGCaag--CAGC- -5'
31827 5' -53.5 NC_006938.1 + 59588 0.66 0.874422
Target:  5'- uGGCauccGCCGcGCcAG-ACAgGUUCGUCGu -3'
miRNA:   3'- cCCG----UGGC-CGuUCuUGUgCAAGCAGC- -5'
31827 5' -53.5 NC_006938.1 + 60948 0.67 0.813859
Target:  5'- cGGGuCACCGGUcuGAACcaucucgACGUUUGUg- -3'
miRNA:   3'- -CCC-GUGGCCGuuCUUG-------UGCAAGCAgc -5'
31827 5' -53.5 NC_006938.1 + 61426 0.67 0.80544
Target:  5'- uGGCACCGGCccucgacacGGAGCAUcgaGUUCGg-- -3'
miRNA:   3'- cCCGUGGCCGu--------UCUUGUG---CAAGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.