miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31828 3' -58.2 NC_006938.1 + 60442 0.66 0.583453
Target:  5'- gAUCcaGCCCGGUGCCCugg--GCUUUCAg -3'
miRNA:   3'- -UAG--UGGGCCACGGGcuugaUGGAGGU- -5'
31828 3' -58.2 NC_006938.1 + 55991 0.67 0.520307
Target:  5'- --gGCCaCGGUGUCCGGGC-ACCUggCCGg -3'
miRNA:   3'- uagUGG-GCCACGGGCUUGaUGGA--GGU- -5'
31828 3' -58.2 NC_006938.1 + 44429 0.67 0.510026
Target:  5'- uUCAUCUGGUGCCUGGAagaagauuCUGCCgauguuuucUCCGc -3'
miRNA:   3'- uAGUGGGCCACGGGCUU--------GAUGG---------AGGU- -5'
31828 3' -58.2 NC_006938.1 + 14077 0.68 0.47972
Target:  5'- -aCACCCGGUacaugcguGCCCuGGGCUACCa--- -3'
miRNA:   3'- uaGUGGGCCA--------CGGG-CUUGAUGGaggu -5'
31828 3' -58.2 NC_006938.1 + 16808 0.68 0.460013
Target:  5'- gAUCAgguCCCaGUGCUgGAACUgACCUCCc -3'
miRNA:   3'- -UAGU---GGGcCACGGgCUUGA-UGGAGGu -5'
31828 3' -58.2 NC_006938.1 + 1427 0.69 0.394665
Target:  5'- gGUCGCCaCGG-GCCgGGugcACUACCUgCCAc -3'
miRNA:   3'- -UAGUGG-GCCaCGGgCU---UGAUGGA-GGU- -5'
31828 3' -58.2 NC_006938.1 + 62828 0.7 0.351819
Target:  5'- -cCGCCuCcGUGCCCGAG--GCCUCCAa -3'
miRNA:   3'- uaGUGG-GcCACGGGCUUgaUGGAGGU- -5'
31828 3' -58.2 NC_006938.1 + 28757 0.7 0.343655
Target:  5'- -cCAUCCcgaGGUGCCCGAGCUcgugccggACCUCg- -3'
miRNA:   3'- uaGUGGG---CCACGGGCUUGA--------UGGAGgu -5'
31828 3' -58.2 NC_006938.1 + 21467 0.71 0.312377
Target:  5'- uGUCACCCGGaccgGCUCGGcCaGCUUCCAg -3'
miRNA:   3'- -UAGUGGGCCa---CGGGCUuGaUGGAGGU- -5'
31828 3' -58.2 NC_006938.1 + 55904 0.71 0.312377
Target:  5'- --gGCCaGGUGCCCGGACaccgugGCCUCUg -3'
miRNA:   3'- uagUGGgCCACGGGCUUGa-----UGGAGGu -5'
31828 3' -58.2 NC_006938.1 + 22675 1.06 0.000951
Target:  5'- cAUCACCCGGUGCCCGAACUACCUCCAc -3'
miRNA:   3'- -UAGUGGGCCACGGGCUUGAUGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.