miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31828 5' -56.4 NC_006938.1 + 19009 0.65 0.727916
Target:  5'- gCCgAGCAGCGuggUGaugaacccgcgcucGGUGG-CCCGGUc -3'
miRNA:   3'- aGG-UUGUCGCua-AC--------------CCACCaGGGCCG- -5'
31828 5' -56.4 NC_006938.1 + 22992 0.66 0.720627
Target:  5'- gUCCAGCAGUGccucugUGauUGGcaCCCGGCg -3'
miRNA:   3'- -AGGUUGUCGCua----ACccACCa-GGGCCG- -5'
31828 5' -56.4 NC_006938.1 + 33024 0.66 0.720627
Target:  5'- uUCCAggACAGCGAggGcaGGUGGaggagcuccgUCCgUGGCg -3'
miRNA:   3'- -AGGU--UGUCGCUaaC--CCACC----------AGG-GCCG- -5'
31828 5' -56.4 NC_006938.1 + 13118 0.66 0.688967
Target:  5'- cCCGugAGCcagcucUGGGagauccUGGUCCCGuGCa -3'
miRNA:   3'- aGGUugUCGcua---ACCC------ACCAGGGC-CG- -5'
31828 5' -56.4 NC_006938.1 + 7068 0.68 0.560245
Target:  5'- cUCCGuCGGUGAcuucucgUGGGUGGUgacuaUCGGCa -3'
miRNA:   3'- -AGGUuGUCGCUa------ACCCACCAg----GGCCG- -5'
31828 5' -56.4 NC_006938.1 + 33807 0.69 0.518402
Target:  5'- aUCGGCuGCGAgcc-GUGGUCCCGGa -3'
miRNA:   3'- aGGUUGuCGCUaaccCACCAGGGCCg -5'
31828 5' -56.4 NC_006938.1 + 55894 0.69 0.50813
Target:  5'- cCCAGacaGGCGAgaGGGUGGggCCUugguGGCg -3'
miRNA:   3'- aGGUUg--UCGCUaaCCCACCa-GGG----CCG- -5'
31828 5' -56.4 NC_006938.1 + 3772 0.71 0.384126
Target:  5'- gUCgGGC-GCGGUggcaaGGGUGGcaucgCCCGGCa -3'
miRNA:   3'- -AGgUUGuCGCUAa----CCCACCa----GGGCCG- -5'
31828 5' -56.4 NC_006938.1 + 1479 0.72 0.358476
Target:  5'- cCCGAgGGCGA---GGUGG-CCCGGUa -3'
miRNA:   3'- aGGUUgUCGCUaacCCACCaGGGCCG- -5'
31828 5' -56.4 NC_006938.1 + 19812 0.72 0.358476
Target:  5'- gUCgGGCAGCGG-UGGcUGGUCCgGGUc -3'
miRNA:   3'- -AGgUUGUCGCUaACCcACCAGGgCCG- -5'
31828 5' -56.4 NC_006938.1 + 56103 0.72 0.358476
Target:  5'- cCCuuGACAGCGAc--GGUGGUCuuGGUg -3'
miRNA:   3'- aGG--UUGUCGCUaacCCACCAGggCCG- -5'
31828 5' -56.4 NC_006938.1 + 2774 0.73 0.326183
Target:  5'- cCCGGCGGgacaGGUUGgcGGUGGUucCCCGGCu -3'
miRNA:   3'- aGGUUGUCg---CUAAC--CCACCA--GGGCCG- -5'
31828 5' -56.4 NC_006938.1 + 5592 0.82 0.084732
Target:  5'- gCCAGCGGCGggUGgcgcguccuGGUGGUCCuCGGCg -3'
miRNA:   3'- aGGUUGUCGCuaAC---------CCACCAGG-GCCG- -5'
31828 5' -56.4 NC_006938.1 + 22714 1.11 0.000723
Target:  5'- cUCCAACAGCGAUUGGGUGGUCCCGGCc -3'
miRNA:   3'- -AGGUUGUCGCUAACCCACCAGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.