Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31829 | 3' | -56.3 | NC_006938.1 | + | 2137 | 0.68 | 0.560245 |
Target: 5'- -gGugGCAGCCGUCAacuggGGCgacgugcaCGCCuCCGa -3' miRNA: 3'- ugCugUGUUGGCAGU-----UCGa-------GCGG-GGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 3457 | 0.66 | 0.710144 |
Target: 5'- gGCGACccgaACAAuCCGuUCAAccagccGCUCGUCCCu -3' miRNA: 3'- -UGCUG----UGUU-GGC-AGUU------CGAGCGGGGc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 6713 | 0.67 | 0.646068 |
Target: 5'- -gGACACAACaGUCcAGCgaugCGCCCa- -3' miRNA: 3'- ugCUGUGUUGgCAGuUCGa---GCGGGgc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 7045 | 0.67 | 0.635288 |
Target: 5'- -aGugGCuuCCGcCAgccugGGCgUCGCCCCGg -3' miRNA: 3'- ugCugUGuuGGCaGU-----UCG-AGCGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 8568 | 0.66 | 0.688967 |
Target: 5'- aACGACugGGCCucUCGGcGCUCGUgCCa -3' miRNA: 3'- -UGCUGugUUGGc-AGUU-CGAGCGgGGc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 8888 | 0.67 | 0.646068 |
Target: 5'- gGCGACACGGCCcaUCcccucucugAAGCUCuCCCCc -3' miRNA: 3'- -UGCUGUGUUGGc-AG---------UUCGAGcGGGGc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 9871 | 0.66 | 0.699587 |
Target: 5'- -aGGC-Cu-CCGUCGAGCUgGCCCa- -3' miRNA: 3'- ugCUGuGuuGGCAGUUCGAgCGGGgc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 10126 | 0.66 | 0.699587 |
Target: 5'- -gGACACGuuguccGCCGUC-AGCgagaUCGUCCCu -3' miRNA: 3'- ugCUGUGU------UGGCAGuUCG----AGCGGGGc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 10803 | 0.68 | 0.618038 |
Target: 5'- gGCGAugacCACGcccgacACCGUCAGGCgcucgguggcgaggaUUGCCCCu -3' miRNA: 3'- -UGCU----GUGU------UGGCAGUUCG---------------AGCGGGGc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 12755 | 0.68 | 0.581526 |
Target: 5'- cACGAcCACAGgacuCCGUCGAGCUUGUUCa- -3' miRNA: 3'- -UGCU-GUGUU----GGCAGUUCGAGCGGGgc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 15277 | 0.66 | 0.678296 |
Target: 5'- uCGACACGACCucgccuucGUCGagaAGUUCGCCaaGa -3' miRNA: 3'- uGCUGUGUUGG--------CAGU---UCGAGCGGggC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 16215 | 0.66 | 0.710144 |
Target: 5'- gUGugGCAGCgGUCGacccAGC-CGCCCUc -3' miRNA: 3'- uGCugUGUUGgCAGU----UCGaGCGGGGc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 18457 | 0.69 | 0.549685 |
Target: 5'- uGCaGCAgCAGCCGUCccgcgacgAGGacaUCGCCCCGa -3' miRNA: 3'- -UGcUGU-GUUGGCAG--------UUCg--AGCGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 19810 | 0.67 | 0.656836 |
Target: 5'- cCGugACuACC-UCAAGCUCGCCg-- -3' miRNA: 3'- uGCugUGuUGGcAGUUCGAGCGGggc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 20223 | 0.69 | 0.553902 |
Target: 5'- aGCGAgGCAGgcuucuggagcagcuCCGUCAAGC-CaGCCCUGu -3' miRNA: 3'- -UGCUgUGUU---------------GGCAGUUCGaG-CGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 21667 | 0.7 | 0.477855 |
Target: 5'- cGCGGgucCAGCUGUCGGGCaaccUGCCCCGg -3' miRNA: 3'- -UGCUgu-GUUGGCAGUUCGa---GCGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 23084 | 0.68 | 0.613729 |
Target: 5'- cGCGAC-CAGCCGUCcuccGGGUUUaugacguaGCCCCu -3' miRNA: 3'- -UGCUGuGUUGGCAG----UUCGAG--------CGGGGc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 23393 | 1.09 | 0.001058 |
Target: 5'- aACGACACAACCGUCAAGCUCGCCCCGa -3' miRNA: 3'- -UGCUGUGUUGGCAGUUCGAGCGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 23699 | 0.78 | 0.163827 |
Target: 5'- gGCGGCAUGGCCGagaugcUCGAGCgCGCCCUGa -3' miRNA: 3'- -UGCUGUGUUGGC------AGUUCGaGCGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 24227 | 0.76 | 0.218856 |
Target: 5'- cCGugGCAAUCGUgAAGCUCGgCaCCCGg -3' miRNA: 3'- uGCugUGUUGGCAgUUCGAGC-G-GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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