Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31829 | 3' | -56.3 | NC_006938.1 | + | 54751 | 0.67 | 0.635288 |
Target: 5'- gGCGGCcacCAACacaGUCGAGCUCuuccuCCCCa -3' miRNA: 3'- -UGCUGu--GUUGg--CAGUUCGAGc----GGGGc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 7045 | 0.67 | 0.635288 |
Target: 5'- -aGugGCuuCCGcCAgccugGGCgUCGCCCCGg -3' miRNA: 3'- ugCugUGuuGGCaGU-----UCG-AGCGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 24397 | 0.67 | 0.624505 |
Target: 5'- -gGAUGCGGCCGUCGAGCa--CCUCGu -3' miRNA: 3'- ugCUGUGUUGGCAGUUCGagcGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 10803 | 0.68 | 0.618038 |
Target: 5'- gGCGAugacCACGcccgacACCGUCAGGCgcucgguggcgaggaUUGCCCCu -3' miRNA: 3'- -UGCU----GUGU------UGGCAGUUCG---------------AGCGGGGc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 23084 | 0.68 | 0.613729 |
Target: 5'- cGCGAC-CAGCCGUCcuccGGGUUUaugacguaGCCCCu -3' miRNA: 3'- -UGCUGuGUUGGCAG----UUCGAG--------CGGGGc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 28650 | 0.68 | 0.601893 |
Target: 5'- cACGACACGuggcuggagcuCCGUCGcggcugggaguggGGCUCGUUCCu -3' miRNA: 3'- -UGCUGUGUu----------GGCAGU-------------UCGAGCGGGGc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 34829 | 0.68 | 0.59223 |
Target: 5'- cGCGACGCGcACgGUCAGuGcCUCGCCUg- -3' miRNA: 3'- -UGCUGUGU-UGgCAGUU-C-GAGCGGGgc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 38505 | 0.68 | 0.581526 |
Target: 5'- cACGACGgGACguugaagGUCAGGC-CGCCaCCGg -3' miRNA: 3'- -UGCUGUgUUGg------CAGUUCGaGCGG-GGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 12755 | 0.68 | 0.581526 |
Target: 5'- cACGAcCACAGgacuCCGUCGAGCUUGUUCa- -3' miRNA: 3'- -UGCU-GUGUU----GGCAGUUCGAGCGGGgc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 62190 | 0.68 | 0.560245 |
Target: 5'- cACGGCACGGCgCGcuaCAcAGCgaacuUCGCCCCGc -3' miRNA: 3'- -UGCUGUGUUG-GCa--GU-UCG-----AGCGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 2137 | 0.68 | 0.560245 |
Target: 5'- -gGugGCAGCCGUCAacuggGGCgacgugcaCGCCuCCGa -3' miRNA: 3'- ugCugUGUUGGCAGU-----UCGa-------GCGG-GGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 20223 | 0.69 | 0.553902 |
Target: 5'- aGCGAgGCAGgcuucuggagcagcuCCGUCAAGC-CaGCCCUGu -3' miRNA: 3'- -UGCUgUGUU---------------GGCAGUUCGaG-CGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 18457 | 0.69 | 0.549685 |
Target: 5'- uGCaGCAgCAGCCGUCccgcgacgAGGacaUCGCCCCGa -3' miRNA: 3'- -UGcUGU-GUUGGCAG--------UUCg--AGCGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 46541 | 0.69 | 0.547579 |
Target: 5'- -gGACACGACCG-CGAGUgacuccacgaaGCCCUGg -3' miRNA: 3'- ugCUGUGUUGGCaGUUCGag---------CGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 62553 | 0.69 | 0.497944 |
Target: 5'- cGCGACGCGucggcgGCCGagGAGUuccgucucaUCGUCCCGa -3' miRNA: 3'- -UGCUGUGU------UGGCagUUCG---------AGCGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 43164 | 0.7 | 0.487851 |
Target: 5'- aACGuC-CAGCUGU--AGCUCGUCCCGg -3' miRNA: 3'- -UGCuGuGUUGGCAguUCGAGCGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 21667 | 0.7 | 0.477855 |
Target: 5'- cGCGGgucCAGCUGUCGGGCaaccUGCCCCGg -3' miRNA: 3'- -UGCUgu-GUUGGCAGUUCGa---GCGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 55405 | 0.71 | 0.420165 |
Target: 5'- uCGGCGCGcucGCCG-CAGGCggccugggcuucUCGCCCCa -3' miRNA: 3'- uGCUGUGU---UGGCaGUUCG------------AGCGGGGc -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 50954 | 0.71 | 0.396505 |
Target: 5'- cCGugAUcucuCCGUCGgugccgagcuggcggAGCUCGCCCCGc -3' miRNA: 3'- uGCugUGuu--GGCAGU---------------UCGAGCGGGGC- -5' |
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31829 | 3' | -56.3 | NC_006938.1 | + | 24227 | 0.76 | 0.218856 |
Target: 5'- cCGugGCAAUCGUgAAGCUCGgCaCCCGg -3' miRNA: 3'- uGCugUGUUGGCAgUUCGAGC-G-GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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