miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3183 3' -53.3 NC_001502.1 + 2211 0.67 0.193179
Target:  5'- aCCCUCAAAgucGggGGGCaaCCCGUCa-- -3'
miRNA:   3'- -GGGGGUUUa--CuuUCUGg-GGGCAGcac -5'
3183 3' -53.3 NC_001502.1 + 4737 0.67 0.187088
Target:  5'- gUCUCCAgaaaaaggggggAAUGAAAGACCccaCCCGUagGUGg -3'
miRNA:   3'- -GGGGGU------------UUACUUUCUGG---GGGCAg-CAC- -5'
3183 3' -53.3 NC_001502.1 + 5358 0.87 0.004238
Target:  5'- uCUUUCAuuuAAUGAAAGACCCCCGUCGUGg -3'
miRNA:   3'- -GGGGGU---UUACUUUCUGGGGGCAGCAC- -5'
3183 3' -53.3 NC_001502.1 + 117 1.11 0.000044
Target:  5'- gCCCCCAAAUGAAAGACCCCCGUCGUGg -3'
miRNA:   3'- -GGGGGUUUACUUUCUGGGGGCAGCAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.