miRNA display CGI


Results 21 - 27 of 27 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31830 3' -55.2 NC_006938.1 + 24459 0.67 0.721704
Target:  5'- gGCCCGUggcaccgCCUCugggacgaagacuGCACgGAGgaggACGACg -3'
miRNA:   3'- aCGGGCA-------GGAGu------------UGUGgCUCa---UGCUG- -5'
31830 3' -55.2 NC_006938.1 + 59004 0.67 0.716424
Target:  5'- cUGCCUcaaUCCUCGugGCCGA---CGACg -3'
miRNA:   3'- -ACGGGc--AGGAGUugUGGCUcauGCUG- -5'
31830 3' -55.2 NC_006938.1 + 18606 0.67 0.726961
Target:  5'- gGCgCGUCCgaggCGGCgcagaaguACCGAG-ACGACc -3'
miRNA:   3'- aCGgGCAGGa---GUUG--------UGGCUCaUGCUG- -5'
31830 3' -55.2 NC_006938.1 + 48201 0.66 0.778037
Target:  5'- aGCgaGUCCUCGuu-CCGAGUGacguCGGCa -3'
miRNA:   3'- aCGggCAGGAGUuguGGCUCAU----GCUG- -5'
31830 3' -55.2 NC_006938.1 + 23577 0.66 0.757974
Target:  5'- aGCUgGUCCUCGcgGCuggcuUCGAGcucgGCGACg -3'
miRNA:   3'- aCGGgCAGGAGU--UGu----GGCUCa---UGCUG- -5'
31830 3' -55.2 NC_006938.1 + 18570 0.66 0.747747
Target:  5'- aUGCUCGUgCaCuuCGCCGAGauaUGCGGCa -3'
miRNA:   3'- -ACGGGCAgGaGuuGUGGCUC---AUGCUG- -5'
31830 3' -55.2 NC_006938.1 + 42380 0.66 0.741556
Target:  5'- cGCCUGucaagccgcacugcuUCCUCGGCGUCGAGUucuucgccgacGCGGCc -3'
miRNA:   3'- aCGGGC---------------AGGAGUUGUGGCUCA-----------UGCUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.