Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31830 | 3' | -55.2 | NC_006938.1 | + | 50030 | 0.68 | 0.640986 |
Target: 5'- cUGCCUGg--UCAACugCGAGgGCGGCc -3' miRNA: 3'- -ACGGGCaggAGUUGugGCUCaUGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 48787 | 0.68 | 0.651868 |
Target: 5'- cGCCaaaGUCCUUGACGaucgcaaugUCGAGUGUGACg -3' miRNA: 3'- aCGGg--CAGGAGUUGU---------GGCUCAUGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 2036 | 0.68 | 0.656216 |
Target: 5'- gGCCCGUCUUCuuggcuauguaguuGCGCUGGGUcACG-Ca -3' miRNA: 3'- aCGGGCAGGAGu-------------UGUGGCUCA-UGCuG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 11276 | 0.67 | 0.705805 |
Target: 5'- gUGCCacaGgCCUCGGCGUCGAGgaggaugGCGGCg -3' miRNA: 3'- -ACGGg--CaGGAGUUGUGGCUCa------UGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 48880 | 0.67 | 0.726961 |
Target: 5'- uUGCCuCGUCCUgCuccACGuuGAGU-CGACc -3' miRNA: 3'- -ACGG-GCAGGA-Gu--UGUggCUCAuGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 48201 | 0.66 | 0.778037 |
Target: 5'- aGCgaGUCCUCGuu-CCGAGUGacguCGGCa -3' miRNA: 3'- aCGggCAGGAGUuguGGCUCAU----GCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 50664 | 0.77 | 0.218571 |
Target: 5'- cGCCCGUCuCUucgaaacCGAC-CCGAGUGCGAUu -3' miRNA: 3'- aCGGGCAG-GA-------GUUGuGGCUCAUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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