Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31830 | 3' | -55.2 | NC_006938.1 | + | 24187 | 1.1 | 0.001004 |
Target: 5'- gUGCCCGUCCUCAACACCGAGUACGACg -3' miRNA: 3'- -ACGGGCAGGAGUUGUGGCUCAUGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 50664 | 0.77 | 0.218571 |
Target: 5'- cGCCCGUCuCUucgaaacCGAC-CCGAGUGCGAUu -3' miRNA: 3'- aCGGGCAG-GA-------GUUGuGGCUCAUGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 6311 | 0.74 | 0.307747 |
Target: 5'- cUGUCCGgccuucgccuuguucUCCUCGACcagcuCCGAGUugGACu -3' miRNA: 3'- -ACGGGC---------------AGGAGUUGu----GGCUCAugCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 42495 | 0.72 | 0.394619 |
Target: 5'- gGCCgCGUCggcgaagaaCUCGACGCCGAggaagcaGUGCGGCu -3' miRNA: 3'- aCGG-GCAG---------GAGUUGUGGCU-------CAUGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 13272 | 0.72 | 0.395519 |
Target: 5'- cGCCUGUCCcacucccggUggUGCCGGGUGCGAa -3' miRNA: 3'- aCGGGCAGGa--------GuuGUGGCUCAUGCUg -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 11181 | 0.72 | 0.404593 |
Target: 5'- cGCCauccUCCUCGACGCCGAGgccugUGGCa -3' miRNA: 3'- aCGGgc--AGGAGUUGUGGCUCau---GCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 5264 | 0.71 | 0.481633 |
Target: 5'- gGCCUGUCCa-GugGCCGAGggGCGAg -3' miRNA: 3'- aCGGGCAGGagUugUGGCUCa-UGCUg -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 27344 | 0.71 | 0.491766 |
Target: 5'- cGCUgGUCCgCGAgACCGAGUACa-- -3' miRNA: 3'- aCGGgCAGGaGUUgUGGCUCAUGcug -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 63112 | 0.7 | 0.501998 |
Target: 5'- cGUCUGUgC-CGAgGCCGAGUAUGGCc -3' miRNA: 3'- aCGGGCAgGaGUUgUGGCUCAUGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 47789 | 0.7 | 0.512321 |
Target: 5'- aGCCaauguucaaGUCgUCGGCuuCGAGUACGGCu -3' miRNA: 3'- aCGGg--------CAGgAGUUGugGCUCAUGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 50030 | 0.68 | 0.640986 |
Target: 5'- cUGCCUGg--UCAACugCGAGgGCGGCc -3' miRNA: 3'- -ACGGGCaggAGUUGugGCUCaUGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 32978 | 0.68 | 0.651868 |
Target: 5'- cGcCCCGUUCUCcgUgggaugguggGCCGAGaGCGACg -3' miRNA: 3'- aC-GGGCAGGAGuuG----------UGGCUCaUGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 48787 | 0.68 | 0.651868 |
Target: 5'- cGCCaaaGUCCUUGACGaucgcaaugUCGAGUGUGACg -3' miRNA: 3'- aCGGg--CAGGAGUUGU---------GGCUCAUGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 2622 | 0.68 | 0.651868 |
Target: 5'- cGUaCCaGaUCCUCGGgAUCGAGUGCGGCc -3' miRNA: 3'- aCG-GG-C-AGGAGUUgUGGCUCAUGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 2036 | 0.68 | 0.656216 |
Target: 5'- gGCCCGUCUUCuuggcuauguaguuGCGCUGGGUcACG-Ca -3' miRNA: 3'- aCGGGCAGGAGu-------------UGUGGCUCA-UGCuG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 39268 | 0.67 | 0.673568 |
Target: 5'- gGUCCGUCC--AACGCCGcg-ACGACc -3' miRNA: 3'- aCGGGCAGGagUUGUGGCucaUGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 55910 | 0.67 | 0.673568 |
Target: 5'- gUGCCCGgacaccguggCCUCugcuACAUCGuGUuCGACg -3' miRNA: 3'- -ACGGGCa---------GGAGu---UGUGGCuCAuGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 33051 | 0.67 | 0.684366 |
Target: 5'- aGCuCCGUCCguggCGACcuguacagggugGCCGAGUgguAUGGCu -3' miRNA: 3'- aCG-GGCAGGa---GUUG------------UGGCUCA---UGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 11276 | 0.67 | 0.705805 |
Target: 5'- gUGCCacaGgCCUCGGCGUCGAGgaggaugGCGGCg -3' miRNA: 3'- -ACGGg--CaGGAGUUGUGGCUCa------UGCUG- -5' |
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31830 | 3' | -55.2 | NC_006938.1 | + | 59004 | 0.67 | 0.716424 |
Target: 5'- cUGCCUcaaUCCUCGugGCCGA---CGACg -3' miRNA: 3'- -ACGGGc--AGGAGUugUGGCUcauGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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