Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31830 | 5' | -56 | NC_006938.1 | + | 59087 | 0.7 | 0.453606 |
Target: 5'- cGGCCacgaggauugaGGCAGcgCGcUGGAGCUCGGCc -3' miRNA: 3'- uCCGGca---------CCGUUa-GC-ACUUCGAGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 4323 | 0.7 | 0.445833 |
Target: 5'- cGGCCGUgaucugguagaGGCGGagcaCGUugacgauggGGAGCUCGGCg -3' miRNA: 3'- uCCGGCA-----------CCGUUa---GCA---------CUUCGAGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 25770 | 0.71 | 0.399012 |
Target: 5'- -aGCUGUGGCAugaaguccCGUGucucGCUCGGCg -3' miRNA: 3'- ucCGGCACCGUua------GCACuu--CGAGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 42608 | 0.72 | 0.381184 |
Target: 5'- gGGGCgGUGGC-GUCGaUGGAGUUCGa- -3' miRNA: 3'- -UCCGgCACCGuUAGC-ACUUCGAGCcg -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 34152 | 0.73 | 0.33098 |
Target: 5'- aAGGUCGU--UGAUCGUGguGCUCGGCc -3' miRNA: 3'- -UCCGGCAccGUUAGCACuuCGAGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 57298 | 0.74 | 0.290823 |
Target: 5'- gAGGCCGUGGagucaGAcgaccagaucaaguUCGUGAAGCgCGGg -3' miRNA: 3'- -UCCGGCACCg----UU--------------AGCACUUCGaGCCg -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 37928 | 0.74 | 0.271878 |
Target: 5'- cGGGCgGUGGCcagggCGgugGAGGCgUCGGCu -3' miRNA: 3'- -UCCGgCACCGuua--GCa--CUUCG-AGCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 48486 | 0.75 | 0.258494 |
Target: 5'- uAGGCCGUGGCcgccucGAUCGUGGAGacagugccgaCGGUc -3' miRNA: 3'- -UCCGGCACCG------UUAGCACUUCga--------GCCG- -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 41408 | 0.8 | 0.109639 |
Target: 5'- cGGCCuGUGG--GUCGUGGAGCUCGGa -3' miRNA: 3'- uCCGG-CACCguUAGCACUUCGAGCCg -5' |
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31830 | 5' | -56 | NC_006938.1 | + | 24223 | 1.12 | 0.000584 |
Target: 5'- cAGGCCGUGGCAAUCGUGAAGCUCGGCa -3' miRNA: 3'- -UCCGGCACCGUUAGCACUUCGAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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