miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31837 3' -58.3 NC_006938.1 + 9353 0.66 0.566018
Target:  5'- gGAGGUguuGAACCcGGugAGGuuGUCCUCGUu -3'
miRNA:   3'- -CUCCG---CUUGGaCCugUUC--CGGGAGCA- -5'
31837 3' -58.3 NC_006938.1 + 49512 0.66 0.566018
Target:  5'- aAGGaagaaGACCUGGgaaacuaaACGAGGUCCUCGa -3'
miRNA:   3'- cUCCgc---UUGGACC--------UGUUCCGGGAGCa -5'
31837 3' -58.3 NC_006938.1 + 17652 0.66 0.555449
Target:  5'- -cGGCuacGACCUGGACuGGGCCUgggcCGa -3'
miRNA:   3'- cuCCGc--UUGGACCUGuUCCGGGa---GCa -5'
31837 3' -58.3 NC_006938.1 + 28221 0.66 0.555449
Target:  5'- cGGcGCGGAUCUGGAUggGGCacaCCUaCGa -3'
miRNA:   3'- cUC-CGCUUGGACCUGuuCCG---GGA-GCa -5'
31837 3' -58.3 NC_006938.1 + 63385 0.66 0.549134
Target:  5'- -cGGUGGACCUGGgugcauacguggacgGCGAGGUCCg--- -3'
miRNA:   3'- cuCCGCUUGGACC---------------UGUUCCGGGagca -5'
31837 3' -58.3 NC_006938.1 + 18524 0.67 0.534491
Target:  5'- -cGGUGGcCuCUGGGC--GGCCCUCGa -3'
miRNA:   3'- cuCCGCUuG-GACCUGuuCCGGGAGCa -5'
31837 3' -58.3 NC_006938.1 + 37534 0.67 0.534491
Target:  5'- -uGGC-AAgCUGGACGAGGCCgccaUCGa -3'
miRNA:   3'- cuCCGcUUgGACCUGUUCCGGg---AGCa -5'
31837 3' -58.3 NC_006938.1 + 19419 0.67 0.534491
Target:  5'- cAGGCGggUgaagccgaguaCUGG-CAAGGCUCUCa- -3'
miRNA:   3'- cUCCGCuuG-----------GACCuGUUCCGGGAGca -5'
31837 3' -58.3 NC_006938.1 + 58759 0.67 0.524116
Target:  5'- aGAGGUGAgaccagucaccGCCUGGACAAuugugucuccGGCCg-CGUu -3'
miRNA:   3'- -CUCCGCU-----------UGGACCUGUU----------CCGGgaGCA- -5'
31837 3' -58.3 NC_006938.1 + 12868 0.67 0.483453
Target:  5'- uGGGCcaauCCUGGACcAGGCgCUCGc -3'
miRNA:   3'- cUCCGcuu-GGACCUGuUCCGgGAGCa -5'
31837 3' -58.3 NC_006938.1 + 51014 0.68 0.473522
Target:  5'- -uGGCGAAgUCUcGGuCcAGGCCCUCGg -3'
miRNA:   3'- cuCCGCUU-GGA-CCuGuUCCGGGAGCa -5'
31837 3' -58.3 NC_006938.1 + 12190 0.68 0.463695
Target:  5'- --uGCGAGCCaGGACGcuucGGGUUCUCGUc -3'
miRNA:   3'- cucCGCUUGGaCCUGU----UCCGGGAGCA- -5'
31837 3' -58.3 NC_006938.1 + 1657 0.68 0.463695
Target:  5'- aGGGGCcGACCUccgacgacaaGGACAAGGCCUg-GUg -3'
miRNA:   3'- -CUCCGcUUGGA----------CCUGUUCCGGGagCA- -5'
31837 3' -58.3 NC_006938.1 + 3815 0.68 0.425501
Target:  5'- cGAGGUGGGCgaCUGGAUgcagGAGG-CCUCGUc -3'
miRNA:   3'- -CUCCGCUUG--GACCUG----UUCCgGGAGCA- -5'
31837 3' -58.3 NC_006938.1 + 55656 0.69 0.398117
Target:  5'- gGAGGCGGcaagggcgGCCUGGGaggAGGGCCCa--- -3'
miRNA:   3'- -CUCCGCU--------UGGACCUg--UUCCGGGagca -5'
31837 3' -58.3 NC_006938.1 + 53398 0.69 0.398117
Target:  5'- uGGGCuu-CCUGGACAgcAGuGCCCUCa- -3'
miRNA:   3'- cUCCGcuuGGACCUGU--UC-CGGGAGca -5'
31837 3' -58.3 NC_006938.1 + 8982 0.71 0.323068
Target:  5'- -uGGCG-GCCUGGACGcGGCCCg--- -3'
miRNA:   3'- cuCCGCuUGGACCUGUuCCGGGagca -5'
31837 3' -58.3 NC_006938.1 + 18357 0.75 0.173046
Target:  5'- gGAGGCGGcCCaGGGCGGcggucaccucgcaguGGCCCUCGUg -3'
miRNA:   3'- -CUCCGCUuGGaCCUGUU---------------CCGGGAGCA- -5'
31837 3' -58.3 NC_006938.1 + 17565 0.77 0.12727
Target:  5'- -cGGCGAcaACCUGGACGcGGCCCagGUg -3'
miRNA:   3'- cuCCGCU--UGGACCUGUuCCGGGagCA- -5'
31837 3' -58.3 NC_006938.1 + 26570 1.07 0.000838
Target:  5'- cGAGGCGAACCUGGACAAGGCCCUCGUc -3'
miRNA:   3'- -CUCCGCUUGGACCUGUUCCGGGAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.