miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31837 5' -56.6 NC_006938.1 + 19596 0.66 0.699203
Target:  5'- uUGCAC--GUGGCGAGGucgUCGCCUg -3'
miRNA:   3'- cAUGUGccCGCCGCUCUucaAGCGGA- -5'
31837 5' -56.6 NC_006938.1 + 62964 0.66 0.699203
Target:  5'- -----gGGGCGGUGA--AGUUCGCUg -3'
miRNA:   3'- caugugCCCGCCGCUcuUCAAGCGGa -5'
31837 5' -56.6 NC_006938.1 + 51382 0.66 0.699203
Target:  5'- cUGCACGGucGUGGCGAGcuGgcggaacgCGCCa -3'
miRNA:   3'- cAUGUGCC--CGCCGCUCuuCaa------GCGGa -5'
31837 5' -56.6 NC_006938.1 + 48347 0.66 0.699203
Target:  5'- -gGCuCGGGCGGCGGuGAcgAGcgCGuCCUg -3'
miRNA:   3'- caUGuGCCCGCCGCU-CU--UCaaGC-GGA- -5'
31837 5' -56.6 NC_006938.1 + 25517 0.66 0.688536
Target:  5'- -cGCAaGGGUGGCuGGAAGgcacaccucaUCGCCUg -3'
miRNA:   3'- caUGUgCCCGCCGcUCUUCa---------AGCGGA- -5'
31837 5' -56.6 NC_006938.1 + 37909 0.66 0.688536
Target:  5'- -cGCGucucaGGGCGGCGAGcGGgcggUgGCCa -3'
miRNA:   3'- caUGUg----CCCGCCGCUCuUCa---AgCGGa -5'
31837 5' -56.6 NC_006938.1 + 11216 0.66 0.677817
Target:  5'- -gGgACGGGCgggucggugucgGGCGAGAAccacUCGCCUc -3'
miRNA:   3'- caUgUGCCCG------------CCGCUCUUca--AGCGGA- -5'
31837 5' -56.6 NC_006938.1 + 1309 0.66 0.677817
Target:  5'- --cCACaGGGCGGCcAGAAGUcCgGCCg -3'
miRNA:   3'- cauGUG-CCCGCCGcUCUUCAaG-CGGa -5'
31837 5' -56.6 NC_006938.1 + 27815 0.66 0.656263
Target:  5'- cGUACGCGuGGCGGa-AGAGGaucgUGCCa -3'
miRNA:   3'- -CAUGUGC-CCGCCgcUCUUCaa--GCGGa -5'
31837 5' -56.6 NC_006938.1 + 55176 0.66 0.656263
Target:  5'- -gGCGCGGauacGCGGUGG--GGUUUGCCg -3'
miRNA:   3'- caUGUGCC----CGCCGCUcuUCAAGCGGa -5'
31837 5' -56.6 NC_006938.1 + 58769 0.67 0.612973
Target:  5'- uGUACGUGGGagaGGUGAGAccAGUcacCGCCUg -3'
miRNA:   3'- -CAUGUGCCCg--CCGCUCU--UCAa--GCGGA- -5'
31837 5' -56.6 NC_006938.1 + 16971 0.67 0.611891
Target:  5'- cGUGCcaACGGcaucaacGCGGaCGAcGAGUUCGCCa -3'
miRNA:   3'- -CAUG--UGCC-------CGCC-GCUcUUCAAGCGGa -5'
31837 5' -56.6 NC_006938.1 + 30091 0.68 0.559278
Target:  5'- -gGCAUGGGUcgguucggcggaGGCuGGGAGUUCuGCCUg -3'
miRNA:   3'- caUGUGCCCG------------CCGcUCUUCAAG-CGGA- -5'
31837 5' -56.6 NC_006938.1 + 55563 0.71 0.373962
Target:  5'- -gGC-CGGGUGGCGGGAAGagcagugUGCCg -3'
miRNA:   3'- caUGuGCCCGCCGCUCUUCaa-----GCGGa -5'
31837 5' -56.6 NC_006938.1 + 62556 0.72 0.348682
Target:  5'- -gACGCGucGGCGGcCGAGGAGUUcCGUCUc -3'
miRNA:   3'- caUGUGC--CCGCC-GCUCUUCAA-GCGGA- -5'
31837 5' -56.6 NC_006938.1 + 62299 0.73 0.309318
Target:  5'- uUGCcaAUGGGCGGgGcGAAGUUCGCUg -3'
miRNA:   3'- cAUG--UGCCCGCCgCuCUUCAAGCGGa -5'
31837 5' -56.6 NC_006938.1 + 15491 0.73 0.309318
Target:  5'- -gACGCGGGCGGCaAGGAcGUccccugcaacaUCGCCa -3'
miRNA:   3'- caUGUGCCCGCCGcUCUU-CA-----------AGCGGa -5'
31837 5' -56.6 NC_006938.1 + 27002 0.75 0.206316
Target:  5'- cGUACACGagcuGGCacGGCGAGGAGUgggagCGCCg -3'
miRNA:   3'- -CAUGUGC----CCG--CCGCUCUUCAa----GCGGa -5'
31837 5' -56.6 NC_006938.1 + 51460 0.76 0.190662
Target:  5'- cUGCugGaGCGGCGGGAAGacCGCCUg -3'
miRNA:   3'- cAUGugCcCGCCGCUCUUCaaGCGGA- -5'
31837 5' -56.6 NC_006938.1 + 26614 1.08 0.001026
Target:  5'- aGUACACGGGCGGCGAGAAGUUCGCCUg -3'
miRNA:   3'- -CAUGUGCCCGCCGCUCUUCAAGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.