miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31839 3' -54.4 NC_006938.1 + 17677 0.66 0.797648
Target:  5'- aCUGGUCcuugauguAGCGGagcaccugGGCc-GCGUCCAGg -3'
miRNA:   3'- cGACCAG--------UCGCCa-------CCGuaUGUAGGUC- -5'
31839 3' -54.4 NC_006938.1 + 53503 0.66 0.787868
Target:  5'- cGCaGGUCGGUcucGGUgagGGCAcUGCuGUCCAGg -3'
miRNA:   3'- -CGaCCAGUCG---CCA---CCGU-AUG-UAGGUC- -5'
31839 3' -54.4 NC_006938.1 + 61857 0.66 0.76783
Target:  5'- cGUUGG-CAGCgcugagcucGGUGGCGUGaucgaacUCCAGg -3'
miRNA:   3'- -CGACCaGUCG---------CCACCGUAUgu-----AGGUC- -5'
31839 3' -54.4 NC_006938.1 + 63280 0.66 0.76783
Target:  5'- cGCUGGcacgacagaagCAGCuGGUGGCAcgcggUGCcUCCAa -3'
miRNA:   3'- -CGACCa----------GUCG-CCACCGU-----AUGuAGGUc -5'
31839 3' -54.4 NC_006938.1 + 46272 0.66 0.76783
Target:  5'- cGC-GGUgCGcGCGGUGGCGaACGagcucuUCCAGg -3'
miRNA:   3'- -CGaCCA-GU-CGCCACCGUaUGU------AGGUC- -5'
31839 3' -54.4 NC_006938.1 + 21340 0.66 0.757594
Target:  5'- aGCgacgGGUCGGCGGaGGgaucgacgucgaCGUGCAcCCAGu -3'
miRNA:   3'- -CGa---CCAGUCGCCaCC------------GUAUGUaGGUC- -5'
31839 3' -54.4 NC_006938.1 + 59215 0.67 0.74723
Target:  5'- uGCUGGa-GGCGGUucuGGCggcgGUGgGUCCAGu -3'
miRNA:   3'- -CGACCagUCGCCA---CCG----UAUgUAGGUC- -5'
31839 3' -54.4 NC_006938.1 + 21987 0.67 0.74723
Target:  5'- cGCUGGUCaAGCacGUGGCcggAUAUgaggaaGUCCGGg -3'
miRNA:   3'- -CGACCAG-UCGc-CACCG---UAUG------UAGGUC- -5'
31839 3' -54.4 NC_006938.1 + 29766 0.67 0.74723
Target:  5'- aGCUGGUuguaCGGCGGcaggGGCGgcuCGUCgAGc -3'
miRNA:   3'- -CGACCA----GUCGCCa---CCGUau-GUAGgUC- -5'
31839 3' -54.4 NC_006938.1 + 40619 0.67 0.730408
Target:  5'- aGCUGG-CGGacCGGUGGCAgguggucguuggaaACAUCCuGg -3'
miRNA:   3'- -CGACCaGUC--GCCACCGUa-------------UGUAGGuC- -5'
31839 3' -54.4 NC_006938.1 + 7494 0.68 0.650051
Target:  5'- aGCcgGGUCGaCGaGUGGCugGCAUCCGGc -3'
miRNA:   3'- -CGa-CCAGUcGC-CACCGuaUGUAGGUC- -5'
31839 3' -54.4 NC_006938.1 + 39683 0.68 0.639026
Target:  5'- -aUGGUCAGCGugccaGUGGCGgcgacguCGUCCGa -3'
miRNA:   3'- cgACCAGUCGC-----CACCGUau-----GUAGGUc -5'
31839 3' -54.4 NC_006938.1 + 29254 0.69 0.59496
Target:  5'- --aGGcCAGCGGUGGCAUAUgacucggCCGa -3'
miRNA:   3'- cgaCCaGUCGCCACCGUAUGua-----GGUc -5'
31839 3' -54.4 NC_006938.1 + 19815 0.72 0.409498
Target:  5'- cGCgucgGG-CAGCGGUGGCug--GUCCGGg -3'
miRNA:   3'- -CGa---CCaGUCGCCACCGuaugUAGGUC- -5'
31839 3' -54.4 NC_006938.1 + 23253 0.73 0.400237
Target:  5'- -gUGGUCGGCGaccgaGGCGgACGUCCAGg -3'
miRNA:   3'- cgACCAGUCGCca---CCGUaUGUAGGUC- -5'
31839 3' -54.4 NC_006938.1 + 27292 1.12 0.000834
Target:  5'- cGCUGGUCAGCGGUGGCAUACAUCCAGg -3'
miRNA:   3'- -CGACCAGUCGCCACCGUAUGUAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.