miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31840 5' -61.9 NC_006938.1 + 21959 0.71 0.175509
Target:  5'- cGCGCUCACGaguGCGCCAUcaaccCGGCGCUGc -3'
miRNA:   3'- cUGUGGGUGU---CGCGGUGc----GCCGCGAC- -5'
31840 5' -61.9 NC_006938.1 + 9827 0.73 0.146122
Target:  5'- uGACACCCA--GUcCCAUGCGGCGCUu -3'
miRNA:   3'- -CUGUGGGUguCGcGGUGCGCCGCGAc -5'
31840 5' -61.9 NC_006938.1 + 9273 0.75 0.102907
Target:  5'- gGACGCCCAUcugcGCGCCACGgCGGUggccagaGCUGg -3'
miRNA:   3'- -CUGUGGGUGu---CGCGGUGC-GCCG-------CGAC- -5'
31840 5' -61.9 NC_006938.1 + 27693 0.82 0.031328
Target:  5'- --gACCCGCuccuguuguuccAGCGCCGCGUGGCGCUGu -3'
miRNA:   3'- cugUGGGUG------------UCGCGGUGCGCCGCGAC- -5'
31840 5' -61.9 NC_006938.1 + 27586 1.08 0.000309
Target:  5'- gGACACCCACAGCGCCACGCGGCGCUGg -3'
miRNA:   3'- -CUGUGGGUGUCGCGGUGCGCCGCGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.