Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31841 | 3' | -48.5 | NC_006938.1 | + | 2080 | 0.66 | 0.973005 |
Target: 5'- -cGACUGcGCCgAGCAGGUGGUCuuuGugGa -3' miRNA: 3'- uaCUGGU-CGG-UUGUCUACUAGu--UugC- -5' |
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31841 | 3' | -48.5 | NC_006938.1 | + | 4836 | 0.68 | 0.934139 |
Target: 5'- --cACCGGCCGaggaguucgGCgAGGUGGUCGAGCu -3' miRNA: 3'- uacUGGUCGGU---------UG-UCUACUAGUUUGc -5' |
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31841 | 3' | -48.5 | NC_006938.1 | + | 5340 | 0.66 | 0.975953 |
Target: 5'- --cACCAGCCGACAGAggccaUGA-CAGAg- -3' miRNA: 3'- uacUGGUCGGUUGUCU-----ACUaGUUUgc -5' |
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31841 | 3' | -48.5 | NC_006938.1 | + | 14457 | 0.66 | 0.978657 |
Target: 5'- aAUGAacaaCAGCCAGCGcGAcaagcUGGUCAGAUu -3' miRNA: 3'- -UACUg---GUCGGUUGU-CU-----ACUAGUUUGc -5' |
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31841 | 3' | -48.5 | NC_006938.1 | + | 15342 | 0.68 | 0.934139 |
Target: 5'- -cGACCGGCCAGCauccAGAgcgccUCGAACa -3' miRNA: 3'- uaCUGGUCGGUUG----UCUacu--AGUUUGc -5' |
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31841 | 3' | -48.5 | NC_006938.1 | + | 21338 | 0.67 | 0.954297 |
Target: 5'- -cGACgGGUCGGCGGAggGAUC-GACGu -3' miRNA: 3'- uaCUGgUCGGUUGUCUa-CUAGuUUGC- -5' |
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31841 | 3' | -48.5 | NC_006938.1 | + | 21381 | 0.67 | 0.954297 |
Target: 5'- cUGGCCgAGCCGGucCGGGUGA-CAAGCc -3' miRNA: 3'- uACUGG-UCGGUU--GUCUACUaGUUUGc -5' |
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31841 | 3' | -48.5 | NC_006938.1 | + | 28126 | 1.09 | 0.005296 |
Target: 5'- aAUGACCAGCCAACAGAUGAUCAAACGg -3' miRNA: 3'- -UACUGGUCGGUUGUCUACUAGUUUGC- -5' |
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31841 | 3' | -48.5 | NC_006938.1 | + | 35130 | 0.67 | 0.966342 |
Target: 5'- -gGAUCAGaagacgaCGGCGGAagUGAUCAGACu -3' miRNA: 3'- uaCUGGUCg------GUUGUCU--ACUAGUUUGc -5' |
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31841 | 3' | -48.5 | NC_006938.1 | + | 42241 | 0.66 | 0.975953 |
Target: 5'- -gGACCGGUCAACGGccGAguuguuguagcCGAGCGa -3' miRNA: 3'- uaCUGGUCGGUUGUCuaCUa----------GUUUGC- -5' |
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31841 | 3' | -48.5 | NC_006938.1 | + | 61967 | 0.76 | 0.571635 |
Target: 5'- cGUGGCCauagAGCCAACAGAUGucuuggCAGugGa -3' miRNA: 3'- -UACUGG----UCGGUUGUCUACua----GUUugC- -5' |
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31841 | 3' | -48.5 | NC_006938.1 | + | 62039 | 0.66 | 0.973005 |
Target: 5'- uAUGGCCacgucugcAGUCGACAuGGUG-UCAAACGu -3' miRNA: 3'- -UACUGG--------UCGGUUGU-CUACuAGUUUGC- -5' |
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31841 | 3' | -48.5 | NC_006938.1 | + | 62683 | 0.67 | 0.949707 |
Target: 5'- gGUGuCCAGCCGgaGCAGGccacUGGUCGggagaugaGACGg -3' miRNA: 3'- -UACuGGUCGGU--UGUCU----ACUAGU--------UUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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