Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31841 | 5' | -60.8 | NC_006938.1 | + | 28163 | 1.1 | 0.000305 |
Target: 5'- aGGCGGUUGCCGCCCCUGCCCUACACAc -3' miRNA: 3'- -CCGCCAACGGCGGGGACGGGAUGUGU- -5' |
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31841 | 5' | -60.8 | NC_006938.1 | + | 28364 | 0.72 | 0.205558 |
Target: 5'- uGGCuGGacaGCUGUCCCUccggccGCCCUACACGg -3' miRNA: 3'- -CCG-CCaa-CGGCGGGGA------CGGGAUGUGU- -5' |
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31841 | 5' | -60.8 | NC_006938.1 | + | 32129 | 0.7 | 0.24519 |
Target: 5'- aGGUGGgcuggGCU-CCCCUGCCCggcuCGCAg -3' miRNA: 3'- -CCGCCaa---CGGcGGGGACGGGau--GUGU- -5' |
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31841 | 5' | -60.8 | NC_006938.1 | + | 51951 | 0.69 | 0.305211 |
Target: 5'- cGGCGG-UGCCGCCCgauCUGCCgCgaaGgACGu -3' miRNA: 3'- -CCGCCaACGGCGGG---GACGG-Ga--UgUGU- -5' |
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31841 | 5' | -60.8 | NC_006938.1 | + | 51501 | 0.66 | 0.428762 |
Target: 5'- aGGCGaucGUcGCCGCguggaacaaCCUGCCCgGCGCGu -3' miRNA: 3'- -CCGC---CAaCGGCGg--------GGACGGGaUGUGU- -5' |
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31841 | 5' | -60.8 | NC_006938.1 | + | 59514 | 0.66 | 0.437996 |
Target: 5'- cGGCGGaUGCCaGCCUCguccggGCCaggcuCACAa -3' miRNA: 3'- -CCGCCaACGG-CGGGGa-----CGGgau--GUGU- -5' |
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31841 | 5' | -60.8 | NC_006938.1 | + | 5367 | 0.69 | 0.298019 |
Target: 5'- aGGCGGUgugGUcaacuCGCCCCUcgGCCaCUGgACAg -3' miRNA: 3'- -CCGCCAa--CG-----GCGGGGA--CGG-GAUgUGU- -5' |
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31841 | 5' | -60.8 | NC_006938.1 | + | 51906 | 0.68 | 0.359257 |
Target: 5'- aGUGGUcUGCaGCUCCUGCUCUgugucGCGCAg -3' miRNA: 3'- cCGCCA-ACGgCGGGGACGGGA-----UGUGU- -5' |
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31841 | 5' | -60.8 | NC_006938.1 | + | 39129 | 0.66 | 0.437996 |
Target: 5'- aGCGG-UGCCGUC---GUCCUGCACAg -3' miRNA: 3'- cCGCCaACGGCGGggaCGGGAUGUGU- -5' |
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31841 | 5' | -60.8 | NC_006938.1 | + | 52503 | 0.66 | 0.447342 |
Target: 5'- gGGcCGGUUGuuGCCaCC-GCCCUGg--- -3' miRNA: 3'- -CC-GCCAACggCGG-GGaCGGGAUgugu -5' |
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31841 | 5' | -60.8 | NC_006938.1 | + | 21855 | 0.66 | 0.466359 |
Target: 5'- cGGUccgGGUUGUCcggGUCCagGCCCUGCACGc -3' miRNA: 3'- -CCG---CCAACGG---CGGGgaCGGGAUGUGU- -5' |
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31841 | 5' | -60.8 | NC_006938.1 | + | 16036 | 0.7 | 0.279938 |
Target: 5'- cGGCGuaucggGCCucGCCCCUGCCCUgugaguaugccuuguGCGCc -3' miRNA: 3'- -CCGCcaa---CGG--CGGGGACGGGA---------------UGUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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