miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31842 3' -55.2 NC_006938.1 + 35590 0.66 0.782001
Target:  5'- gUCGAGGaucUCGAagaugcgcuggcgcaCCCGGCCcgacacacGGAGGAg -3'
miRNA:   3'- gAGCUCU---AGCU---------------GGGCCGGuu------CUUCCU- -5'
31842 3' -55.2 NC_006938.1 + 19104 0.66 0.782001
Target:  5'- -aCGAGAUCGACCucacagUcgagucaagagagcaGGCCGAGAAGa- -3'
miRNA:   3'- gaGCUCUAGCUGG------G---------------CCGGUUCUUCcu -5'
31842 3' -55.2 NC_006938.1 + 21501 0.66 0.768154
Target:  5'- gCUCGAaGUCGGCCCacGCCuccuccGAGGGGc -3'
miRNA:   3'- -GAGCUcUAGCUGGGc-CGGuu----CUUCCU- -5'
31842 3' -55.2 NC_006938.1 + 10169 0.66 0.768154
Target:  5'- gUCGAGGgaaaGACCuCGGaCCAGGucacggccGAGGAg -3'
miRNA:   3'- gAGCUCUag--CUGG-GCC-GGUUC--------UUCCU- -5'
31842 3' -55.2 NC_006938.1 + 17226 0.66 0.768154
Target:  5'- -gCGAGggCaACCUGGCggagauCGAGAAGGAg -3'
miRNA:   3'- gaGCUCuaGcUGGGCCG------GUUCUUCCU- -5'
31842 3' -55.2 NC_006938.1 + 29132 0.66 0.758098
Target:  5'- uUCGAGGacaUCGAUCUG-CaCAAGAGGGGc -3'
miRNA:   3'- gAGCUCU---AGCUGGGCcG-GUUCUUCCU- -5'
31842 3' -55.2 NC_006938.1 + 22037 0.66 0.758098
Target:  5'- aUCaAGGUCGGCUacgaGGCCGAGGAcGGc -3'
miRNA:   3'- gAGcUCUAGCUGGg---CCGGUUCUU-CCu -5'
31842 3' -55.2 NC_006938.1 + 24660 0.67 0.737622
Target:  5'- uUCaAGAUgGACCgGGCCAcGcGGGAg -3'
miRNA:   3'- gAGcUCUAgCUGGgCCGGUuCuUCCU- -5'
31842 3' -55.2 NC_006938.1 + 21700 0.67 0.727223
Target:  5'- uCUCuGAGAUagaCGACCUGGaCCAgcacgGGGAGGu -3'
miRNA:   3'- -GAG-CUCUA---GCUGGGCC-GGU-----UCUUCCu -5'
31842 3' -55.2 NC_006938.1 + 12840 0.67 0.716733
Target:  5'- gCUCGAGAacgccgacgacaUCGACCUgugGGCCAAuccuGGAc -3'
miRNA:   3'- -GAGCUCU------------AGCUGGG---CCGGUUcuu-CCU- -5'
31842 3' -55.2 NC_006938.1 + 5564 0.67 0.69552
Target:  5'- -aCGAGAUgUGGga-GGCCGAGAAGGAg -3'
miRNA:   3'- gaGCUCUA-GCUgggCCGGUUCUUCCU- -5'
31842 3' -55.2 NC_006938.1 + 8099 0.67 0.684819
Target:  5'- aUCGAGAUggCGACCCGcGUCcgcGAGGAc -3'
miRNA:   3'- gAGCUCUA--GCUGGGC-CGGuucUUCCU- -5'
31842 3' -55.2 NC_006938.1 + 22416 0.67 0.684819
Target:  5'- -gCGAGA-CGGCCCuGGUCAugcgcggcaAGGAGGGc -3'
miRNA:   3'- gaGCUCUaGCUGGG-CCGGU---------UCUUCCU- -5'
31842 3' -55.2 NC_006938.1 + 2632 0.68 0.674068
Target:  5'- cCUCGGGAUCGAgugcggccuCCaCGGCgAcGAGGGu -3'
miRNA:   3'- -GAGCUCUAGCU---------GG-GCCGgUuCUUCCu -5'
31842 3' -55.2 NC_006938.1 + 58463 0.68 0.630785
Target:  5'- --gGAGAccuuugUCGGCCUGGCCAGGGAc-- -3'
miRNA:   3'- gagCUCU------AGCUGGGCCGGUUCUUccu -5'
31842 3' -55.2 NC_006938.1 + 17509 0.69 0.576764
Target:  5'- uCUCGAGAUCGAaggccacccUCCGcgcucccuuCCAGGAGGGGa -3'
miRNA:   3'- -GAGCUCUAGCU---------GGGCc--------GGUUCUUCCU- -5'
31842 3' -55.2 NC_006938.1 + 22121 0.69 0.576764
Target:  5'- gUCGAGAUCGGUCaGaCCAAGGAGGGg -3'
miRNA:   3'- gAGCUCUAGCUGGgCcGGUUCUUCCU- -5'
31842 3' -55.2 NC_006938.1 + 7007 0.7 0.534289
Target:  5'- aCUUGGGGaaCGGcCCCGGCUggGGAGGc -3'
miRNA:   3'- -GAGCUCUa-GCU-GGGCCGGuuCUUCCu -5'
31842 3' -55.2 NC_006938.1 + 6101 0.71 0.492973
Target:  5'- --aGAGA-CGGCCCuGGCCGAGGcauGGGGc -3'
miRNA:   3'- gagCUCUaGCUGGG-CCGGUUCU---UCCU- -5'
31842 3' -55.2 NC_006938.1 + 17821 0.73 0.370595
Target:  5'- aUCGAGG-CGGCCCGcGCCuauggcaugcGGAAGGAc -3'
miRNA:   3'- gAGCUCUaGCUGGGC-CGGu---------UCUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.